Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NQZ97_RS09380 Genome accession   NZ_CP102136
Coordinates   1924735..1925511 (-) Length   258 a.a.
NCBI ID   WP_043025274.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919735..1930511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09355 (NQZ97_09355) - 1920553..1921263 (+) 711 WP_024377995.1 GntR family transcriptional regulator -
  NQZ97_RS09360 (NQZ97_09360) - 1921369..1922658 (+) 1290 WP_257110507.1 IS4 family transposase -
  NQZ97_RS09365 (NQZ97_09365) - 1922920..1923651 (-) 732 WP_174850432.1 GntR family transcriptional regulator -
  NQZ97_RS09370 (NQZ97_09370) - 1923751..1924068 (-) 318 WP_043025272.1 DUF960 domain-containing protein -
  NQZ97_RS09375 (NQZ97_09375) - 1924126..1924659 (-) 534 WP_024375910.1 DUF402 domain-containing protein -
  NQZ97_RS09380 (NQZ97_09380) recX 1924735..1925511 (-) 777 WP_043025274.1 recombination regulator RecX Regulator
  NQZ97_RS09385 (NQZ97_09385) rlmD 1925549..1926901 (+) 1353 WP_256787876.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  NQZ97_RS09390 (NQZ97_09390) - 1927190..1928497 (+) 1308 Protein_1835 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30415.97 Da        Isoelectric Point: 9.2585

>NTDB_id=614917 NQZ97_RS09380 WP_043025274.1 1924735..1925511(-) (recX) [Streptococcus suis strain M105052_S26]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKLLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=614917 NQZ97_RS09380 WP_043025274.1 1924735..1925511(-) (recX) [Streptococcus suis strain M105052_S26]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACTGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAG
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGCAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATTGCCA
AGGAACTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368