Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NQZ97_RS09070 Genome accession   NZ_CP102136
Coordinates   1862663..1864324 (-) Length   553 a.a.
NCBI ID   WP_170238175.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1857663..1869324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS09045 (NQZ97_09045) - 1859105..1859572 (-) 468 WP_256787661.1 GNAT family N-acetyltransferase -
  NQZ97_RS09050 (NQZ97_09050) - 1859977..1860252 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  NQZ97_RS09055 (NQZ97_09055) - 1860342..1860938 (-) 597 WP_172035405.1 YpmS family protein -
  NQZ97_RS09060 (NQZ97_09060) - 1860910..1861743 (-) 834 WP_170238174.1 SGNH/GDSL hydrolase family protein -
  NQZ97_RS09065 (NQZ97_09065) - 1861736..1862569 (-) 834 WP_002936253.1 DegV family protein -
  NQZ97_RS09070 (NQZ97_09070) recN 1862663..1864324 (-) 1662 WP_170238175.1 DNA repair protein RecN Machinery gene
  NQZ97_RS09075 (NQZ97_09075) - 1864327..1864752 (-) 426 WP_105130181.1 arginine repressor -
  NQZ97_RS09080 (NQZ97_09080) - 1864745..1865566 (-) 822 WP_043027149.1 TlyA family RNA methyltransferase -
  NQZ97_RS09085 (NQZ97_09085) - 1865559..1866431 (-) 873 WP_024398994.1 polyprenyl synthetase family protein -
  NQZ97_RS09090 (NQZ97_09090) - 1866431..1866646 (-) 216 WP_043027148.1 exodeoxyribonuclease VII small subunit -
  NQZ97_RS09095 (NQZ97_09095) xseA 1866621..1867964 (-) 1344 WP_043027147.1 exodeoxyribonuclease VII large subunit -
  NQZ97_RS09100 (NQZ97_09100) - 1868188..1869096 (+) 909 Protein_1776 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62775.95 Da        Isoelectric Point: 4.6297

>NTDB_id=614913 NQZ97_RS09070 WP_170238175.1 1862663..1864324(-) (recN) [Streptococcus suis strain M105052_S26]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDDYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLEGRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELALVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=614913 NQZ97_RS09070 WP_170238175.1 1862663..1864324(-) (recN) [Streptococcus suis strain M105052_S26]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGACTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGCTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTGGACAATCTAGATT
TTGACGGTAATCGTCTCATGCAATTAGAAGGTCGCCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTGTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTC
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCATTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGAGTGTCTGGACGTGTGGCCCAGGCCATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45