Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   NQZ97_RS06815 Genome accession   NZ_CP102136
Coordinates   1367003..1370656 (-) Length   1217 a.a.
NCBI ID   WP_256787469.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1362003..1375656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS06800 (NQZ97_06800) parE 1362495..1364444 (-) 1950 WP_257110474.1 DNA topoisomerase IV subunit B -
  NQZ97_RS06805 (NQZ97_06805) plsY 1364587..1365297 (+) 711 WP_079762885.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  NQZ97_RS06810 (NQZ97_06810) - 1365478..1366680 (+) 1203 WP_257110715.1 IS110 family transposase -
  NQZ97_RS06815 (NQZ97_06815) rexA 1367003..1370656 (-) 3654 WP_256787469.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NQZ97_RS06820 (NQZ97_06820) rexB 1370656..1373922 (-) 3267 WP_257110475.1 ATP-dependent nuclease subunit B Machinery gene

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 139809.28 Da        Isoelectric Point: 5.1780

>NTDB_id=614904 NQZ97_RS06815 WP_256787469.1 1367003..1370656(-) (rexA) [Streptococcus suis strain M105052_S26]
MVFEQFFSTEEIRAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMDLRRHLSAQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFADYLEKDENGAFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSMSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQVQAVPLLILLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHSLVAGSPGQKIAQPKHEMEYLIYDQQDSANSSTDAEEETP
LTAGEIEVVVKEIIRLHNEEGADFKDITLLVQKRTHNDLIMSIFEKHGIPIVADGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKMELAHQASGQHPELMSGELKKKIKDFLSILENWRAFAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQTNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKENGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVTDEDLTE
EKIGKLTLKSKLEDASLKDIRQSEDIAQALDQLSSVQELNERYKAAIELPSLRTPSQIKKLYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVRAALEAVHAEQAIKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDSLSQEQFVLRGIIDGYLLYDNHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKVN

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=614904 NQZ97_RS06815 WP_256787469.1 1367003..1370656(-) (rexA) [Streptococcus suis strain M105052_S26]
ATGGTTTTTGAACAATTTTTCAGCACGGAAGAAATCAGGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATTTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCCGGGTCAGGAAAGA
CCTTCGTCATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACCAGCTCTTTATCTCGACCTTTACA
GTCAAGGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACCATTGCGGAGACGACCGATATGGACTT
GCGTCGGCATTTGTCGGCCCAGTTGGCGGATTTGACCAAGGCGGATATTGGGACCATGGACTCTTTTACGCAGAAATTGG
TGACAACCTATGGTTATAGCCTTGGCATTTCTCCACAGTTTCGGATCTTACAGGATGAGACAGAAAAAGCGAGTCTGAAA
AAAGAGGTCTTTGACCAGCTCTTTGCAGATTATCTTGAAAAGGATGAAAATGGTGCATTCCGAAAATTAGTTCGCAATTT
TTCGGGCAACCGTAAGGATAATAGTGGTTTCCGTCAGGTAGTTTATCAGGTGCATGATTTTAGTCAATCGATGAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATCTTAGAGCAAGGC
TTTAAGGAAAAAGTGTTAGATAAGCTCTATCAAGCAGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGATCTGCCAAGTATTTTGCAAATGTGGAAGAAGTCTTGGATTTGTTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAGAATCCTTCTTATCAACGACCAGTCCAGAGGCAAGGGTCTGACCAATGCCAATCGACCAAAA
GATGAACATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTACGCGATTTGGGTCA
GGAAGTTTATGAATTAACCCTGCTGAAAGATTATCAGGTTCAAGCTGTGCCCTTGCTGATATTATTACGTGACTTTGTCT
TGGATTTTTCTCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGCATTTTAGAAGAAAATGCAGACATCCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAAGA
TAACAACCATAGCCAAGAGCGAATGTTGGACCTGCTGTCTAATGGTCACAACCGCTTTATGGTGGGTGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCGGATCCGATGATTTTCCAAGAGAAATTTGAACTGTATCAGGCAAATCCTCAGGCTGGG
AAATTGATTTTGCTCAAGGAAAATTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCTATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAATATGACGACACCCACAGTCTAGTGGCTGGTAGTCCAGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTGATTTACGACCAACAGGATAGCGCAAACTCTTCAACGGATGCTGAGGAAGAAACACCT
CTGACTGCTGGTGAAATTGAGGTTGTTGTAAAAGAGATTATTCGCCTTCACAATGAAGAAGGAGCAGACTTCAAGGACAT
CACTCTCTTGGTACAAAAGCGGACGCACAATGATCTCATTATGTCCATTTTTGAAAAACATGGGATTCCAATTGTGGCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATTATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCACCTATGTTCCGATTCGATGAGGATGAACTGACACGGATTTCCTTGCA
GGCTGGGACAGGTTTCTTTTATCAGAAAATGGAACTAGCCCATCAAGCAAGTGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCAAGGATTTCTTGTCTATCTTAGAAAACTGGCGTGCTTTTGCCAAACTGCATTCTATCTATGAT
TTGATTTGGAAGATCTTCAATGAAAAATTCTACTATGACTATGTCGGTGCTCTTCCAAATGGCAGCAAGCGTCAGGCCAA
TCTATATGCACTAGGTCTGCGTGCCAACCAGTTCGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAATGACAAGGATTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAGCTGATGACCATT
CATAAGTCAAAAGGTCTGGAGTTCAAGTATGTCTTCCTCATGAACATCGATAAGCGTTTCAACTTGGAAGACCATTACCA
GTCAGTCATTATCAGCCGGAAAAATGGTCTAGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACCCTTCCTTATCAAACTAATCTCCAAGAGCTAAAAATTGCCAATCTTTCGGAACAA
ATGCGGTTGCTTTATGTTGCACTAACGCGTGCCGAGAAGAAGCTGTATCTGGTTGGAAAGGGTAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAAAAGGAAAATGGCGTACTTGCCCAATCAACTCGTGAAAGCATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTTTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTGACGGATGAGGATTTGACGGAG
GAGAAGATTGGTAAACTTACATTGAAGAGTAAGCTAGAAGATGCCAGCCTTAAAGATATTCGTCAATCAGAAGACATCGC
TCAAGCCTTGGACCAGTTGTCTTCTGTTCAAGAGTTGAACGAACGCTATAAGGCTGCCATTGAATTGCCAAGTTTACGGA
CTCCAAGTCAAATCAAGAAGCTCTATGAGCCTATTTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTTAACTTGCCAGATTTTTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGCAGCTCTAGAAGCTGTTCATGCTGAGCAAGCGA
TTAAAGATAAAATCAATGTTCAGATGATTTTGGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAT
AAACTTCATCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATTCTTTGTCACAGGAACAATTTGTCCTTCGTGGGATTAT
CGATGGCTACCTACTGTATGATAATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAATCCAACTCA
GCCAACGTTACCAAGCTCAAATGCAACTCTATGCGGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGGATTGAAGTGGTTGAAGTCAAGGTAAACTAA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

51.922

100

0.522