Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   NQZ97_RS04825 Genome accession   NZ_CP102136
Coordinates   980522..982735 (+) Length   737 a.a.
NCBI ID   WP_256787303.1    Uniprot ID   -
Organism   Streptococcus suis strain M105052_S26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975522..987735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ97_RS04820 (NQZ97_04820) cls 978818..980365 (+) 1548 WP_024395267.1 cardiolipin synthase -
  NQZ97_RS04825 (NQZ97_04825) recJ 980522..982735 (+) 2214 WP_256787303.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  NQZ97_RS04830 (NQZ97_04830) - 982714..982935 (+) 222 WP_238140967.1 hypothetical protein -
  NQZ97_RS04835 (NQZ97_04835) - 983071..983730 (+) 660 WP_238140965.1 DUF3114 domain-containing protein -
  NQZ97_RS04840 (NQZ97_04840) - 983898..984410 (+) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  NQZ97_RS04845 (NQZ97_04845) metA 984514..985455 (+) 942 WP_043026270.1 homoserine O-succinyltransferase -
  NQZ97_RS04850 (NQZ97_04850) - 985465..986139 (+) 675 WP_002937132.1 DnaD domain-containing protein -
  NQZ97_RS04855 (NQZ97_04855) - 986141..986824 (+) 684 WP_043026267.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -
  NQZ97_RS04860 (NQZ97_04860) - 986814..987608 (+) 795 WP_043026265.1 Nif3-like dinuclear metal center hexameric protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82573.22 Da        Isoelectric Point: 4.5161

>NTDB_id=614892 NQZ97_RS04825 WP_256787303.1 980522..982735(+) (recJ) [Streptococcus suis strain M105052_S26]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIHSAEELHTFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETFPNAYAIVHPEHPEGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHQIALMIDSKN
VERKDVVQAIYDEAKTMLRQDRPVQVLAKEGWNPGVLGIVAGRLLEELQQPVIVLSIEDGKAKGSARSVEAVDIFKALKD
HQDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYLRDFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPHYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKGAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=614892 NQZ97_RS04825 WP_256787303.1 980522..982735(+) (recJ) [Streptococcus suis strain M105052_S26]
GTGATAAAACCCAATTATGACTGGCAATTATTGACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTGGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCATTCGGCGGAAGAATTGCATACTTTCTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTCTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAACCGTTTCACAGATGGCTATGGGCCGAATCAGTCAGTTTACAAGTATT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCTTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCCGAGGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGCGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTTATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGACGATC
CTAATCCAGCCATCGAATTACTGACTGGTTTTGATGACGAAGAGGCCCATCAAATTGCCCTCATGATTGACAGTAAAAAT
GTAGAACGCAAAGACGTCGTCCAAGCAATTTACGATGAAGCAAAAACCATGCTCCGTCAGGATAGACCTGTTCAAGTTCT
GGCTAAAGAAGGTTGGAACCCAGGTGTTTTAGGGATTGTAGCAGGACGCCTACTAGAAGAATTGCAACAACCTGTTATCG
TCTTGTCTATTGAAGATGGTAAGGCAAAGGGTTCGGCTCGTTCTGTTGAAGCGGTTGACATTTTCAAGGCCCTTAAAGAT
CATCAGGACCTATTTATCGCCTTTGGTGGTCATGCTGGTGCAGCAGGTATGACCTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTAACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTATGGCATGGATAATAAAAAGCCT
GTATTCTACCTCAGAGACTTTCAGGTGGAATCAGCAAGAACTATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCTGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTTGATGCTCGCGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCTATTTATTTTAAAAACGAAATTGCCAAACCGCACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAAACCATTTACCAATTTGATGAGTTTGATGTTCGCTATAAACTGAAAGATTTAGCTGGTTACTTAAAAATTAA
GGACAGTCTCTTGGTTAAAATGATCCAGATTTTCCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGGGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-432)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

72.283

99.864

0.722
  recJ Bacillus subtilis subsp. subtilis str. 168

38.369

100

0.389