Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   LH706_RS16085 Genome accession   NZ_CP085043
Coordinates   3409079..3410578 (+) Length   499 a.a.
NCBI ID   WP_247394176.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RS638     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3404079..3415578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LH706_RS16060 (LH706_16070) - 3405272..3406255 (+) 984 WP_016724265.1 SIS domain-containing protein -
  LH706_RS16065 (LH706_16075) - 3406294..3406881 (+) 588 WP_011000373.1 HAD family hydrolase -
  LH706_RS16070 (LH706_16080) lptC 3406883..3407515 (+) 633 WP_104070120.1 LPS export ABC transporter periplasmic protein LptC -
  LH706_RS16075 (LH706_16085) lptA 3407584..3408159 (+) 576 WP_011000371.1 lipopolysaccharide transport periplasmic protein LptA -
  LH706_RS16080 (LH706_16090) lptB 3408193..3408981 (+) 789 WP_016724264.1 LPS export ABC transporter ATP-binding protein -
  LH706_RS16085 (LH706_16095) rpoN/rpoN1 3409079..3410578 (+) 1500 WP_247394176.1 RNA polymerase factor sigma-54 Machinery gene
  LH706_RS16090 (LH706_16100) hpf 3410630..3410983 (+) 354 WP_011000368.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LH706_RS16095 (LH706_16105) ptsN 3411332..3411787 (+) 456 WP_003269869.1 PTS IIA-like nitrogen regulatory protein PtsN -
  LH706_RS16100 (LH706_16110) hprK 3411858..3412832 (+) 975 WP_011000367.1 HPr(Ser) kinase/phosphatase -
  LH706_RS16105 (LH706_16115) - 3413023..3413358 (+) 336 WP_020425146.1 PsiF family protein -
  LH706_RS16110 (LH706_16120) rapZ 3413452..3414342 (+) 891 WP_011000365.1 RNase adapter RapZ -
  LH706_RS16115 (LH706_16125) - 3414420..3415070 (+) 651 WP_016724261.1 LON peptidase substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 55254.58 Da        Isoelectric Point: 4.8064

>NTDB_id=614886 LH706_RS16085 WP_247394176.1 3409079..3410578(+) (rpoN/rpoN1) [Ralstonia pseudosolanacearum strain RS638]
MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADGSVNALQSNSATPLPTE
SPPPAANGADHADTAEASYENGSDFDSDYGTERSDWSLDDFARKPQSDEDDRAPMQLREAEPTQREFLMEQLAPLKLSPR
DKGLVIFLIESLDDEGYLTGSLDEILADLPAELEVELDELQAALRMLQSFDPAGIGARSAAECLTLQLQRLDSPAKPLAL
TIVNQHLELLAARDYTRLKKALSVDDGELKAAHELIRSLAPFPGHAFGRAEADFVVPDVVVRKTAAGWMAQLNPDVMPRL
RINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLH
ESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRT
VAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=614886 LH706_RS16085 WP_247394176.1 3409079..3410578(+) (rpoN/rpoN1) [Ralstonia pseudosolanacearum strain RS638]
ATGAAACAGTCGCTCCAGCTCCGTCTCTCCCAGCATCTGGCGCTCACGCCACAACTGCAGCAGTCGATCCGGCTGCTGCA
GTTGTCGACCATCGAGCTGCAACAGGAAGTCGAGCAGGCGCTGACCGAGAACCCGCTGCTCGAGCGCGAGAACGAGTGGC
TCGACACCTCCGCGCGCATCGGCGCCGACGGCTCGGTCAACGCCCTGCAGAGCAACAGCGCCACCCCGCTGCCGACCGAA
TCGCCGCCGCCCGCCGCCAACGGCGCGGACCATGCCGACACGGCCGAGGCATCGTACGAAAACGGCAGCGATTTCGACAG
CGACTACGGCACCGAGCGGTCCGACTGGAGCCTCGACGACTTCGCGCGCAAACCCCAGTCCGACGAAGACGACCGCGCGC
CGATGCAGCTGCGCGAGGCCGAACCCACGCAGCGCGAATTCCTGATGGAACAACTCGCGCCGCTCAAGCTGTCCCCGCGC
GACAAGGGCCTCGTCATCTTCCTGATCGAATCGCTGGACGACGAAGGCTACCTGACCGGCTCGCTCGATGAGATCCTCGC
CGACCTGCCGGCCGAACTCGAGGTCGAGCTCGACGAATTGCAGGCCGCGCTGCGGATGCTGCAGAGCTTCGATCCGGCCG
GCATCGGTGCGCGCTCGGCGGCCGAATGCCTGACGCTGCAGCTGCAGCGCCTGGACTCCCCGGCCAAGCCGCTGGCGCTG
ACCATCGTCAACCAGCATCTCGAACTGCTCGCCGCGCGCGACTACACGCGGCTGAAGAAAGCGCTGTCCGTCGATGATGG
CGAGCTGAAGGCCGCGCATGAGCTGATCCGCTCGCTGGCGCCCTTTCCTGGCCACGCCTTCGGGCGGGCCGAGGCCGACT
TCGTCGTGCCCGACGTGGTGGTGCGCAAGACCGCCGCCGGCTGGATGGCACAGCTGAACCCCGACGTGATGCCACGCCTG
CGCATCAACGACATGTATGCGCAGATCCTGCGCAGCAGCCGTGGCGAATCGGGTGCCGCCAACCTGCAGCAGAAGCTGCA
GGAAGCGCGCTGGCTGATCAAAAATATCCAGCAGCGCTTCGACACCATCCTGCGTGTCTCGCAAGCAATTGTCGAACGTC
AAAAGAGCTTTTTCACGCACGGTGAAATCGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCCGATACACTGGGTCTACAC
GAGTCCACGATCTCCCGTGTGACGACCAACAAATACATGGCAACCCCCATGGGGACCTTCGAGCTGAAGTACTTCTTCGG
CAGCCATGTATCGACGGAAACCGGCGGGGCCGCGTCATCCACCGCGATACGCGCGCTCATCAAGCAACTTGTAGGAGCCG
AAGACCCGAAGAATCCTCTGTCCGATAGCAGAATTGCCGAGCTGTTAGGCGAACAGGGATTCGTGGTGGCCCGTCGGACG
GTGGCCAAGTACCGCGAAGCCCTCAAGATCCCAGCAGTGAATCTGCGCAAGTCTTTATAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

99.8

100

0.998