Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LG951_RS11735 Genome accession   NZ_CP085037
Coordinates   2298941..2299711 (-) Length   256 a.a.
NCBI ID   WP_113387154.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2293941..2304711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS11715 (LG951_11715) - 2294034..2294855 (-) 822 WP_003217375.1 pyruvate, water dikinase regulatory protein -
  LG951_RS11720 (LG951_11720) - 2294881..2295519 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  LG951_RS11725 (LG951_11725) glyS 2295686..2297731 (-) 2046 WP_113387153.1 glycine--tRNA ligase subunit beta -
  LG951_RS11730 (LG951_11730) glyQ 2297724..2298611 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  LG951_RS11735 (LG951_11735) recO 2298941..2299711 (-) 771 WP_113387154.1 DNA repair protein RecO Machinery gene
  LG951_RS11740 (LG951_11740) - 2299747..2299890 (-) 144 WP_003217288.1 YqzL family protein -
  LG951_RS11745 (LG951_11745) era 2300039..2300944 (-) 906 WP_003217394.1 GTPase Era -
  LG951_RS11750 (LG951_11750) - 2300937..2301335 (-) 399 WP_003217296.1 cytidine deaminase -
  LG951_RS11755 (LG951_11755) - 2301449..2301835 (-) 387 WP_226803673.1 diacylglycerol kinase family protein -
  LG951_RS11760 (LG951_11760) ybeY 2301813..2302292 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  LG951_RS11765 (LG951_11765) - 2302293..2304404 (-) 2112 WP_374726557.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29262.96 Da        Isoelectric Point: 8.4348

>NTDB_id=614826 LG951_RS11735 WP_113387154.1 2298941..2299711(-) (recO) [Bacillus pumilus strain BIM B-171]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKMPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=614826 LG951_RS11735 WP_113387154.1 2298941..2299711(-) (recO) [Bacillus pumilus strain BIM B-171]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAAGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAAATGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758