Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LG951_RS11405 Genome accession   NZ_CP085037
Coordinates   2243060..2243395 (+) Length   111 a.a.
NCBI ID   WP_012010555.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2238060..2248395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS11385 (LG951_11385) gcvT 2238537..2239634 (-) 1098 WP_106033135.1 glycine cleavage system aminomethyltransferase GcvT -
  LG951_RS11390 (LG951_11390) - 2240197..2241867 (+) 1671 WP_106033136.1 DEAD/DEAH box helicase -
  LG951_RS11395 (LG951_11395) - 2241882..2242679 (+) 798 WP_003217448.1 YqhG family protein -
  LG951_RS11400 (LG951_11400) - 2242862..2243026 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  LG951_RS11405 (LG951_11405) sinR 2243060..2243395 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  LG951_RS11410 (LG951_11410) tasA 2243463..2244263 (-) 801 WP_003217403.1 biofilm matrix protein TasA -
  LG951_RS11415 (LG951_11415) sipW 2244321..2244893 (-) 573 WP_003217306.1 signal peptidase I SipW -
  LG951_RS11420 (LG951_11420) tapA 2244945..2245472 (-) 528 WP_106029150.1 amyloid fiber anchoring/assembly protein TapA -
  LG951_RS11425 (LG951_11425) - 2245772..2246050 (+) 279 WP_003217457.1 DUF3889 domain-containing protein -
  LG951_RS11430 (LG951_11430) - 2246084..2246278 (-) 195 WP_034620826.1 YqzE family protein -
  LG951_RS11435 (LG951_11435) - 2246338..2246721 (-) 384 WP_003217479.1 competence type IV pilus minor pilin ComGG -
  LG951_RS11440 (LG951_11440) comGF 2246718..2247248 (-) 531 WP_226803663.1 competence type IV pilus minor pilin ComGF -
  LG951_RS19905 comGE 2247157..2247474 (-) 318 WP_003217390.1 competence type IV pilus minor pilin ComGE -
  LG951_RS11445 (LG951_11445) comGD 2247458..2247904 (-) 447 WP_212045911.1 competence type IV pilus minor pilin ComGD -
  LG951_RS11450 (LG951_11450) comGC 2247897..2248190 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 13001.59 Da        Isoelectric Point: 5.2831

>NTDB_id=614823 LG951_RS11405 WP_012010555.1 2243060..2243395(+) (sinR) [Bacillus pumilus strain BIM B-171]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=614823 LG951_RS11405 WP_012010555.1 2243060..2243395(+) (sinR) [Bacillus pumilus strain BIM B-171]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946