Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LG951_RS11210 Genome accession   NZ_CP085037
Coordinates   2208325..2209128 (-) Length   267 a.a.
NCBI ID   WP_003215740.1    Uniprot ID   A0AB34QSQ5
Organism   Bacillus pumilus strain BIM B-171     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2203325..2214128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS11190 (LG951_11190) - 2205534..2205770 (+) 237 WP_050943781.1 DUF2627 domain-containing protein -
  LG951_RS11195 (LG951_11195) - 2205805..2206542 (-) 738 WP_137054993.1 glycerophosphodiester phosphodiesterase -
  LG951_RS11200 (LG951_11200) - 2206768..2207868 (-) 1101 WP_226803658.1 Rap family tetratricopeptide repeat protein -
  LG951_RS11205 (LG951_11205) - 2207856..2208053 (-) 198 WP_034661994.1 hypothetical protein -
  LG951_RS11210 (LG951_11210) spo0A 2208325..2209128 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  LG951_RS11215 (LG951_11215) spoIVB 2209414..2210691 (-) 1278 WP_226803659.1 SpoIVB peptidase -
  LG951_RS11220 (LG951_11220) recN 2210890..2212626 (-) 1737 WP_137054990.1 DNA repair protein RecN Machinery gene
  LG951_RS11225 (LG951_11225) ahrC 2212660..2213109 (-) 450 WP_003215836.1 transcriptional regulator AhrC/ArgR -
  LG951_RS11230 (LG951_11230) - 2213269..2214123 (-) 855 WP_137054989.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29946.45 Da        Isoelectric Point: 6.3914

>NTDB_id=614821 LG951_RS11210 WP_003215740.1 2208325..2209128(-) (spo0A) [Bacillus pumilus strain BIM B-171]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRRNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=614821 LG951_RS11210 WP_003215740.1 2208325..2209128(-) (spo0A) [Bacillus pumilus strain BIM B-171]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGTCTAACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATTATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATCTAGGCGCATCTTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGAAACAAACCTGAACCGAAACGCAGAAACTTAGATGCGAGCATTACAACGATT
ATTCATGAGATTGGCGTCCCGGCTCATATTAAAGGTTACTTATACTTAAGAGAAGCCATTTCGATGGTGTACAATGACAT
CGAGCTTCTCGGAAGCATCACAAAAGTGTTGTATCCAGACATCGCGAAGAAATTTAACACGACCGCGAGCAGAGTAGAAC
GAGCGATTCGTCATGCGATTGAAGTGGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATCGCAATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884