Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LG951_RS10265 Genome accession   NZ_CP085037
Coordinates   2038365..2038976 (+) Length   203 a.a.
NCBI ID   WP_050943864.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2033365..2043976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS10225 (LG951_10225) - 2033531..2034649 (+) 1119 WP_226803624.1 NADH-dependent flavin oxidoreductase -
  LG951_RS10230 (LG951_10230) - 2034702..2035208 (-) 507 WP_003216086.1 PTS glucose transporter subunit IIA -
  LG951_RS10235 (LG951_10235) - 2035376..2035795 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  LG951_RS10240 (LG951_10240) - 2035816..2036268 (-) 453 WP_137055056.1 YppG family protein -
  LG951_RS10245 (LG951_10245) - 2036375..2036746 (-) 372 WP_137055055.1 YppE family protein -
  LG951_RS10250 (LG951_10250) - 2036804..2037037 (-) 234 WP_223251159.1 DUF5446 family protein -
  LG951_RS10255 (LG951_10255) sspM 2037234..2037338 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  LG951_RS10260 (LG951_10260) - 2037362..2038318 (-) 957 WP_050943865.1 DUF2515 domain-containing protein -
  LG951_RS10265 (LG951_10265) recU 2038365..2038976 (+) 612 WP_050943864.1 Holliday junction resolvase RecU Machinery gene
  LG951_RS10270 (LG951_10270) - 2039020..2041734 (+) 2715 WP_226803626.1 PBP1A family penicillin-binding protein -
  LG951_RS10275 (LG951_10275) - 2041969..2042478 (-) 510 WP_003215857.1 YpoC family protein -
  LG951_RS10280 (LG951_10280) nth 2042475..2043137 (-) 663 WP_003215968.1 endonuclease III -
  LG951_RS10285 (LG951_10285) - 2043155..2043859 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23287.49 Da        Isoelectric Point: 8.9930

>NTDB_id=614820 LG951_RS10265 WP_050943864.1 2038365..2038976(+) (recU) [Bacillus pumilus strain BIM B-171]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKLGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=614820 LG951_RS10265 WP_050943864.1 2038365..2038976(+) (recU) [Bacillus pumilus strain BIM B-171]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAGATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAGCAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAGACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCTAGGCGGCATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGATGAATTAATGGAAGCCGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.277

99.507

0.719