Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LG951_RS08890 Genome accession   NZ_CP085037
Coordinates   1773809..1774189 (+) Length   126 a.a.
NCBI ID   WP_223251181.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1768809..1779189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS08880 (LG951_08880) - 1769102..1772245 (+) 3144 WP_226805232.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  LG951_RS08885 (LG951_08885) - 1772638..1773546 (+) 909 WP_226805234.1 trypsin-like serine peptidase -
  LG951_RS08890 (LG951_08890) nucA/comI 1773809..1774189 (+) 381 WP_223251181.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LG951_RS08895 (LG951_08895) - 1774338..1775186 (+) 849 WP_044141412.1 STAS domain-containing protein -
  LG951_RS08900 (LG951_08900) - 1775219..1775761 (-) 543 WP_003211360.1 IseA DL-endopeptidase inhibitor family protein -
  LG951_RS08905 (LG951_08905) - 1776056..1776490 (+) 435 WP_226805236.1 hypothetical protein -
  LG951_RS08910 (LG951_08910) lexA 1776536..1777156 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  LG951_RS08915 (LG951_08915) yneA 1777316..1777627 (+) 312 WP_003211955.1 cell division suppressor protein YneA -
  LG951_RS08920 (LG951_08920) - 1777645..1778292 (+) 648 WP_003211322.1 recombinase family protein -
  LG951_RS08925 (LG951_08925) - 1778362..1778592 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13785.42 Da        Isoelectric Point: 7.3831

>NTDB_id=614819 LG951_RS08890 WP_223251181.1 1773809..1774189(+) (nucA/comI) [Bacillus pumilus strain BIM B-171]
MGTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=614819 LG951_RS08890 WP_223251181.1 1773809..1774189(+) (nucA/comI) [Bacillus pumilus strain BIM B-171]
ATGGGCACGCTGTTAGGTGGATTTGGGGAGGAACATGCGGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACGATAGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACTAAGCCTGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGTCCGTCTGATAATAGGGGAGCGGGCTCATG
GGTCGGACACCAGATGAGCGGGTATCCTGATGGGAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548