Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LG951_RS07190 Genome accession   NZ_CP085037
Coordinates   1429346..1429624 (+) Length   92 a.a.
NCBI ID   WP_003211634.1    Uniprot ID   A0AB34QPU8
Organism   Bacillus pumilus strain BIM B-171     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1424346..1434624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS07165 (LG951_07165) - 1424440..1424715 (-) 276 WP_034619939.1 hypothetical protein -
  LG951_RS07170 (LG951_07170) - 1424859..1426478 (+) 1620 WP_226805126.1 ABC-F family ATP-binding cassette domain-containing protein -
  LG951_RS07175 (LG951_07175) - 1426517..1427749 (-) 1233 WP_106029769.1 aminopeptidase -
  LG951_RS07180 (LG951_07180) - 1427856..1427987 (-) 132 WP_003210922.1 protein YkpC -
  LG951_RS07185 (LG951_07185) mreBH 1428062..1429069 (-) 1008 WP_003211642.1 rod-share determining protein MreBH -
  LG951_RS07190 (LG951_07190) abrB 1429346..1429624 (+) 279 WP_003211634.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LG951_RS07195 (LG951_07195) - 1429767..1431077 (+) 1311 WP_003211426.1 ATP-binding protein -
  LG951_RS07200 (LG951_07200) - 1431082..1431918 (+) 837 WP_226805127.1 gamma-glutamylcyclotransferase -
  LG951_RS07205 (LG951_07205) - 1431956..1432624 (+) 669 WP_003211815.1 potassium channel family protein -
  LG951_RS07210 (LG951_07210) ade 1432888..1434618 (+) 1731 WP_226805128.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=614814 LG951_RS07190 WP_003211634.1 1429346..1429624(+) (abrB) [Bacillus pumilus strain BIM B-171]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYKPEGVCLMTGEITSENHDYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=614814 LG951_RS07190 WP_003211634.1 1429346..1429624(+) (abrB) [Bacillus pumilus strain BIM B-171]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTAAGAAGAGCACTTGA
TATTGCCATTAAAGACAGTATGGAATTTTTTATAGATGGGGAGAAAATCGTCTTGAAAAAATACAAGCCAGAGGGTGTTT
GCCTCATGACTGGTGAGATTACATCAGAGAACCATGATTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTCTTAAAAGAGCTGCAAGAAGCTCTTCAGCAGTAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.565