Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LG951_RS06955 Genome accession   NZ_CP085037
Coordinates   1389242..1389703 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain BIM B-171     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384242..1394703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS06930 (LG951_06930) - 1384851..1385735 (+) 885 WP_137054701.1 cation diffusion facilitator family transporter -
  LG951_RS06935 (LG951_06935) - 1385797..1385949 (-) 153 WP_170965990.1 hypothetical protein -
  LG951_RS06940 (LG951_06940) - 1386251..1386790 (+) 540 WP_003211813.1 RDD family protein -
  LG951_RS06945 (LG951_06945) - 1386916..1388226 (+) 1311 WP_034620047.1 MFS transporter -
  LG951_RS06950 (LG951_06950) - 1388300..1389208 (+) 909 WP_003212225.1 chemotaxis protein -
  LG951_RS06955 (LG951_06955) kre 1389242..1389703 (-) 462 WP_012009774.1 YkyB family protein Regulator
  LG951_RS06960 (LG951_06960) - 1389929..1390822 (-) 894 WP_137054700.1 helix-turn-helix domain-containing protein -
  LG951_RS06965 (LG951_06965) - 1390935..1391831 (+) 897 WP_003211579.1 DMT family transporter -
  LG951_RS06970 (LG951_06970) - 1392027..1392242 (-) 216 WP_050945147.1 hypothetical protein -
  LG951_RS06975 (LG951_06975) - 1392584..1393861 (-) 1278 WP_212045814.1 MFS transporter -
  LG951_RS06980 (LG951_06980) - 1393935..1394432 (-) 498 WP_050945145.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=614812 LG951_RS06955 WP_012009774.1 1389242..1389703(-) (kre) [Bacillus pumilus strain BIM B-171]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=614812 LG951_RS06955 WP_012009774.1 1389242..1389703(-) (kre) [Bacillus pumilus strain BIM B-171]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTGGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771