Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   LG951_RS05780 Genome accession   NZ_CP085037
Coordinates   1167044..1167241 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162044..1172241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS05750 (LG951_05750) - 1162452..1162631 (+) 180 WP_003211282.1 YjzC family protein -
  LG951_RS05755 (LG951_05755) - 1162802..1164067 (+) 1266 WP_226805009.1 MFS transporter -
  LG951_RS05760 (LG951_05760) - 1164183..1164377 (-) 195 WP_003211779.1 YjzD family protein -
  LG951_RS05765 (LG951_05765) - 1164589..1165329 (+) 741 WP_003211061.1 hypothetical protein -
  LG951_RS05770 (LG951_05770) - 1165405..1165980 (+) 576 WP_226805011.1 nad binding enzyme -
  LG951_RS05775 (LG951_05775) med 1166071..1167033 (+) 963 WP_050945301.1 BMP family ABC transporter substrate-binding protein Regulator
  LG951_RS05780 (LG951_05780) comZ 1167044..1167241 (+) 198 WP_003211983.1 ComZ family protein Regulator
  LG951_RS05785 (LG951_05785) - 1167252..1167485 (-) 234 WP_226805013.1 hypothetical protein -
  LG951_RS05790 (LG951_05790) - 1167655..1168593 (+) 939 WP_003212296.1 beta-ketoacyl-ACP synthase III -
  LG951_RS05795 (LG951_05795) fabF 1168615..1169856 (+) 1242 WP_003211631.1 beta-ketoacyl-ACP synthase II -
  LG951_RS05800 (LG951_05800) - 1169934..1170728 (+) 795 WP_050945299.1 DUF2268 domain-containing protein -
  LG951_RS05805 (LG951_05805) - 1170899..1171879 (+) 981 WP_212046073.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=614805 LG951_RS05780 WP_003211983.1 1167044..1167241(+) (comZ) [Bacillus pumilus strain BIM B-171]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=614805 LG951_RS05780 WP_003211983.1 1167044..1167241(+) (comZ) [Bacillus pumilus strain BIM B-171]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
AGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTTATGCAAGAGGCATATGAGCTTG
GAAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677