Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LG951_RS01905 Genome accession   NZ_CP085037
Coordinates   352771..353199 (-) Length   142 a.a.
NCBI ID   WP_003214307.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 347771..358199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS01875 (LG951_01875) - 347927..348250 (+) 324 WP_106029719.1 YckD family protein -
  LG951_RS01880 (LG951_01880) - 348306..349070 (-) 765 WP_226804634.1 MBL fold metallo-hydrolase -
  LG951_RS01885 (LG951_01885) - 349186..349602 (+) 417 WP_226804635.1 Lrp/AsnC family transcriptional regulator -
  LG951_RS01890 (LG951_01890) - 349632..350438 (+) 807 WP_137055254.1 aminoglycoside N(3)-acetyltransferase -
  LG951_RS01895 (LG951_01895) - 350440..350826 (-) 387 WP_050943233.1 competence protein ComJ -
  LG951_RS01900 (LG951_01900) - 350947..352644 (-) 1698 WP_226804636.1 methyl-accepting chemotaxis protein -
  LG951_RS01905 (LG951_01905) nucA/comI 352771..353199 (-) 429 WP_003214307.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LG951_RS01910 (LG951_01910) - 353567..355636 (+) 2070 WP_226804637.1 hydantoinase/oxoprolinase family protein -
  LG951_RS01915 (LG951_01915) - 355626..357611 (+) 1986 WP_226804638.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5536

>NTDB_id=614796 LG951_RS01905 WP_003214307.1 352771..353199(-) (nucA/comI) [Bacillus pumilus strain BIM B-171]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=614796 LG951_RS01905 WP_003214307.1 352771..353199(-) (nucA/comI) [Bacillus pumilus strain BIM B-171]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563