Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ98_RS04690 Genome accession   NZ_CP102135
Coordinates   917462..919231 (+) Length   589 a.a.
NCBI ID   WP_171997304.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 912462..924231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS04660 (NQZ98_04660) - 913267..914028 (+) 762 WP_171997303.1 class I SAM-dependent methyltransferase -
  NQZ98_RS04665 (NQZ98_04665) pcp 914025..914672 (+) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  NQZ98_RS04670 (NQZ98_04670) - 914672..914980 (+) 309 WP_024390333.1 DUF4298 domain-containing protein -
  NQZ98_RS04675 (NQZ98_04675) rpsP 915105..915377 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ98_RS04680 (NQZ98_04680) - 915399..915641 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ98_RS04685 (NQZ98_04685) rcrP 915717..917453 (+) 1737 WP_014637988.1 ABC transporter ATP-binding protein Regulator
  NQZ98_RS04690 (NQZ98_04690) rcrQ 917462..919231 (+) 1770 WP_171997304.1 ABC transporter ATP-binding protein Regulator
  NQZ98_RS04695 (NQZ98_04695) - 919288..920211 (-) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NQZ98_RS04700 (NQZ98_04700) - 920316..921602 (+) 1287 WP_002940676.1 homoserine dehydrogenase -
  NQZ98_RS04705 (NQZ98_04705) thrB 921606..922466 (+) 861 WP_171997305.1 homoserine kinase -
  NQZ98_RS04710 (NQZ98_04710) murB 922701..923606 (+) 906 WP_024399121.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65758.78 Da        Isoelectric Point: 5.7937

>NTDB_id=614796 NQZ98_RS04690 WP_171997304.1 917462..919231(+) (rcrQ) [Streptococcus suis strain M106471_S40]
MKNRSVFTRVWDYLRRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTAGLTGQVSFEQVEFGYSEDKPLIRNFNLNVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=614796 NQZ98_RS04690 WP_171997304.1 917462..919231(+) (rcrQ) [Streptococcus suis strain M106471_S40]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTACGTCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTGGAGCCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGGCGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTACAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCACTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTTTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCCCTGGTACACGGCTTCTCAAATAT
CGCCTATGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTACAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTGGTTTGACCGG
ACAAGTCAGCTTTGAGCAGGTCGAATTTGGCTATTCAGAAGATAAGCCGCTTATCCGTAACTTTAATCTTAATGTTAAGC
CAGGAGAAATGGTGGCTATCGTTGGACCAACAGGAGCAGGTAAGACAACTCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAATGTTGACCATTTTATCCGTACCCTACCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGACAAAAACAGCTTTTGACCATTGCACGTGCCTTGTTGGCAGACCCCGCTATTCT
AATCCTGGATGAAGCGACTTCATCAGTCGATACACGTTTGGAACTATTGATTCAAAAAGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTTGTCATCGCCCACCGTCTATCAACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436