Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQZ98_RS04685 Genome accession   NZ_CP102135
Coordinates   915717..917453 (+) Length   578 a.a.
NCBI ID   WP_014637988.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 910717..922453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS04645 (NQZ98_04645) - 911094..911750 (+) 657 WP_029743195.1 hypothetical protein -
  NQZ98_RS04650 (NQZ98_04650) - 911768..912058 (+) 291 WP_024400533.1 hypothetical protein -
  NQZ98_RS04655 (NQZ98_04655) - 912457..913131 (+) 675 WP_024400534.1 hypothetical protein -
  NQZ98_RS04660 (NQZ98_04660) - 913267..914028 (+) 762 WP_171997303.1 class I SAM-dependent methyltransferase -
  NQZ98_RS04665 (NQZ98_04665) pcp 914025..914672 (+) 648 WP_024390332.1 pyroglutamyl-peptidase I -
  NQZ98_RS04670 (NQZ98_04670) - 914672..914980 (+) 309 WP_024390333.1 DUF4298 domain-containing protein -
  NQZ98_RS04675 (NQZ98_04675) rpsP 915105..915377 (+) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ98_RS04680 (NQZ98_04680) - 915399..915641 (+) 243 WP_012028079.1 KH domain-containing protein -
  NQZ98_RS04685 (NQZ98_04685) rcrP 915717..917453 (+) 1737 WP_014637988.1 ABC transporter ATP-binding protein Regulator
  NQZ98_RS04690 (NQZ98_04690) rcrQ 917462..919231 (+) 1770 WP_171997304.1 ABC transporter ATP-binding protein Regulator
  NQZ98_RS04695 (NQZ98_04695) - 919288..920211 (-) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NQZ98_RS04700 (NQZ98_04700) - 920316..921602 (+) 1287 WP_002940676.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65078.39 Da        Isoelectric Point: 5.1942

>NTDB_id=614795 NQZ98_RS04685 WP_014637988.1 915717..917453(+) (rcrP) [Streptococcus suis strain M106471_S40]
MNLIWTYLKKYPKWIALDLLGALLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREEFQEERFESVNEEYTDISKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALAPLQTGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
EGITETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEKFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=614795 NQZ98_RS04685 WP_014637988.1 915717..917453(+) (rcrP) [Streptococcus suis strain M106471_S40]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGGGCCTTATTGTTTGTAGT
GGTAAACTTGGGCTTGCCAACTTTTTTGGCTAGGATGATTGACCAAGGAATTACAAAGAACGATGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGGATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAATTG
ACTACCAATATCGTCAAAGATATTCGAAATGATTTGTATGAGAAAATTCAGGACTATTCTCATCACGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTTCTCATGCAATTCTCTGAAATGGTCTTAAAACTAG
GTATTATTACACCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTAGCCTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCTCTTTCTGAAAAGCAACAAAAACG
ATTGGACACGATCAACCAATATGTTCGTGAAAATCTCATGGGCTTGCGTGTCATTCGTGCCTTTACTCGTGAGGAGTTTC
AAGAGGAGCGCTTTGAGTCGGTCAATGAGGAATATACCGATATTTCCAAAAAGCTCTTTAATCTGACTGGATTGACAGAG
CCGCTCTTTGTCCAGATTATTATTGCTATGATTGTAGCCATTGTCTGGTTCGCATTGGCTCCTTTGCAAACAGGCAGTCT
GCAAATCGGTGATTTGGTAGCCTTTATCGAATATAGTTTCCACGCGCTTTTCTCATTCTTGCTCTTTGCTAACTTGTTTA
ACATGTATCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCCATTTCCATTTCTAAGAATGAA
GAAGGTATTACTGAAACAGATACTCGTGGTTATTTGGAATTTGAAAATGTAACTTTTGCCTACCCTGGTGAAACGGAATC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACGATTGCCTTTATTGGTTCGACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTAAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGCAAGGAAGAAAAATTCGACACCCATCTAGCTGAGGGCGGAAGCAACCTGTCAGGCGGGCAAAAGCAACGTTTGTCC
ATTGCACGTGCTATTGTGAAGCAGCCGGATATTTACATTTTTGATGATTCTTTCTCAGCCTTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTGATTGTTGCCCAACGCGTCGGAACCATTATGG
ATGCTGACCAGATTATCGTGCTGAACGAAGGTGAAATCGTTGGCCGCGGCACCCACAATGAATTGATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTTAACCGTCAATCTCTGACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.605

100

0.393