Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   NQZ98_RS03020 Genome accession   NZ_CP102135
Coordinates   561357..562133 (+) Length   258 a.a.
NCBI ID   WP_024399828.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556357..567133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS03005 (NQZ98_03005) - 556832..556936 (+) 105 Protein_544 IS3 family transposase -
  NQZ98_RS03010 (NQZ98_03010) - 558177..559649 (+) 1473 WP_024399830.1 plasmid recombination protein -
  NQZ98_RS03015 (NQZ98_03015) rlmD 559970..561319 (-) 1350 Protein_546 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  NQZ98_RS03020 (NQZ98_03020) recX 561357..562133 (+) 777 WP_024399828.1 recombination regulator RecX Regulator
  NQZ98_RS03025 (NQZ98_03025) - 562209..562742 (+) 534 WP_004194106.1 DUF402 domain-containing protein -
  NQZ98_RS03030 (NQZ98_03030) - 562800..563117 (+) 318 WP_002942715.1 DUF960 domain-containing protein -
  NQZ98_RS03035 (NQZ98_03035) - 563217..563948 (+) 732 WP_014735520.1 GntR family transcriptional regulator -
  NQZ98_RS03040 (NQZ98_03040) - 564089..564799 (-) 711 WP_004194099.1 GntR family transcriptional regulator -
  NQZ98_RS03045 (NQZ98_03045) - 565006..566778 (+) 1773 WP_024399826.1 beta-galactosidase family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30416.91 Da        Isoelectric Point: 9.0746

>NTDB_id=614781 NQZ98_RS03020 WP_024399828.1 561357..562133(+) (recX) [Streptococcus suis strain M106471_S40]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFRELRDFAQFSYGKNLALYYLSFKQRTQKEVSDYL
KKYEIEENTIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKPLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQTVLRDYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=614781 NQZ98_RS03020 WP_024399828.1 561357..562133(+) (recX) [Streptococcus suis strain M106471_S40]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTGTATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTCGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATTTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCCAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACACTATTGTCAAGATTGTGACGGTATTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTTCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACCGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGTAAGGGGTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTATGAATTGAAGCAAAGGTTGATACAGGCTTTA
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGACGGTCCTTCGTGATTATCTGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.206

100

0.364