Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   NQZ84_RS10300 Genome accession   NZ_CP102094
Coordinates   2127889..2130429 (-) Length   846 a.a.
NCBI ID   WP_044694067.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2122889..2135429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10260 (NQZ84_10260) - 2123271..2124014 (-) 744 WP_013730659.1 amino acid ABC transporter ATP-binding protein -
  NQZ84_RS10265 (NQZ84_10265) - 2124014..2124817 (-) 804 WP_024407716.1 amino acid ABC transporter permease -
  NQZ84_RS10270 (NQZ84_10270) - 2125003..2125854 (-) 852 WP_257047596.1 amino acid ABC transporter substrate-binding protein -
  NQZ84_RS10280 (NQZ84_10280) - 2125887..2126494 (-) 608 Protein_1992 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  NQZ84_RS10285 (NQZ84_10285) - 2126670..2126843 (-) 174 WP_002941962.1 hypothetical protein -
  NQZ84_RS10290 (NQZ84_10290) - 2126877..2127317 (-) 441 WP_024409072.1 DUF3021 domain-containing protein -
  NQZ84_RS10295 (NQZ84_10295) - 2127314..2127757 (-) 444 WP_024409071.1 LytTR family DNA-binding domain-containing protein -
  NQZ84_RS10300 (NQZ84_10300) hexA 2127889..2130429 (-) 2541 WP_044694067.1 DNA mismatch repair protein MutS Machinery gene
  NQZ84_RS10305 (NQZ84_10305) argR 2130444..2130884 (-) 441 WP_002937036.1 arginine repressor -
  NQZ84_RS10310 (NQZ84_10310) argS 2130991..2132679 (+) 1689 WP_015647550.1 arginine--tRNA ligase -
  NQZ84_RS10315 (NQZ84_10315) - 2132859..2133773 (+) 915 WP_257047593.1 SH3 domain-containing protein -
  NQZ84_RS10320 (NQZ84_10320) - 2133827..2134351 (-) 525 WP_024384267.1 ABC transporter permease -
  NQZ84_RS10325 (NQZ84_10325) - 2134463..2134645 (+) 183 WP_015647552.1 hypothetical protein -

Sequence


Protein


Download         Length: 846 a.a.        Molecular weight: 95064.47 Da        Isoelectric Point: 4.7721

>NTDB_id=614742 NQZ84_RS10300 WP_044694067.1 2127889..2130429(-) (hexA) [Streptococcus suis strain 12RC1]
MATEKISPGMQQYLDIKAQYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLV
ELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNSLTDLEKAAAGKLLSYLHRTQMRDLSHLQK
VVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFF
ERSDLVEALKGVYDIERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILQQINEPALGNLVAGLDPIPELHALISSAIDP
EAQGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYFHVTNSNLGNVPDHFFRKA
TLKNSERYGTEELAKIEGQMLEARDKSANLEYEIFMRIRQEVEKYIGRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFT
DQRELTIDRGRHAVVEKVMGKQTYIPNSIHLDTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDRSLILFDELGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHEL
TDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPANPAPSVV
EEPSGQIDLFADTPSHPVLDELEKLDIYNMTPMEVMMAVAELKKKI

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=614742 NQZ84_RS10300 WP_044694067.1 2127889..2130429(-) (hexA) [Streptococcus suis strain 12RC1]
ATGGCAACAGAAAAAATTTCTCCGGGAATGCAGCAGTATCTGGATATAAAAGCACAGTATCCAGATGCTTTTTTGCTTTT
CCGTATGGGAGACTTTTATGAGTTATTTTATGAAGATGCGGTAGAGGCTGCACAGATTTTGGAATTGTCCTTGACCAGTC
GGAATAAGAATGCGGAAAATCCGATTCCTATGGCGGGGGTACCGTATCACGCGGCACAACAGTATATCGACACACTTGTT
GAATTGGGGCACAAGGTCGCAATTGCCGAGCAGATGGAAGATCCTAAGCAGGCAGTCGGCGTGGTCAAGCGAGAAGTAGT
GCAGGTCATTACTCCTGGTACGGTAACAGACTCGTCCAAAATGGGAGCAGACAGTAACTATTTGGTTGCGATTGACCGTC
AGGGAGTGCAGTTCGCACTTTCTTATATGGATGTGTCAACAGGTCAGTTTTTTGTGACTAGTTTGGATGATTTTACTAGT
CTTTGCGGTGAGATCCGCAATTTACGGGCACGTGAATTAGTCATCGGCTACGCTTTATCTGAGGAAGAAGAGCAGGTCTT
TTCGAACCAGATGAACCTCCTGCTCTCTTTTGAGGATGAGGTGACGGAAGATGTCCAGCTGATTGACAACTCCTTGACAG
ACTTGGAAAAGGCTGCGGCAGGGAAACTCCTCAGCTACCTACATCGGACTCAGATGCGAGATCTGAGCCACTTGCAAAAG
GTGGTCCACTATGAAATCAAGGACTATCTACAAATGGACTATGCAACCAAGTCCAGTCTGGATCTGCTTGAAAACGGTCG
GACAGGCAAGAAGCATGGTAGTTTGTACTGGTTGCTAGACGAAACTAAGACAGCCATGGGTATGCGACTATTGCGGACAT
GGATTGATCGTCCCTTGATTGATCTTAAGCGGATTGAGAATCGTCAGGCTGTCGTTCAGGTTTTTCTGGATTACTTCTTT
GAACGGAGTGACTTGGTCGAGGCTTTAAAAGGTGTCTATGACATCGAACGCTTGGCCAGCCGGGTGTCTTTTGGAAAAAC
CATGCCCAAGGATCTCTTGCAGCTCTCCCAGACTCTGGGAAATATCCCAGCAATCAAGAATATCTTGCAACAAATCAATG
AGCCTGCTCTAGGCAATCTGGTAGCTGGATTGGACCCAATCCCAGAACTGCACGCTCTCATCAGCTCTGCTATTGACCCA
GAAGCCCAAGGGACCATCACAGATGGAAACATCATCCGTACAGGCTTTGACGAAACGCTGGATCAGTATCGTCTGGTCAT
GCGTGAGGGAGCGGGTTGGATTGCGGAGATTGAGGCCAAGGAGCGTGAAGCGTCTGGTATCAACAATCTTAAGATTGATT
ACAACAAAAAAGACGGTTACTATTTCCATGTGACCAATTCCAATCTGGGTAATGTGCCGGACCATTTTTTCCGTAAGGCG
ACCTTGAAAAACTCGGAGCGCTATGGAACGGAAGAGTTGGCTAAGATCGAAGGGCAGATGTTGGAGGCGCGTGATAAGTC
TGCTAATTTGGAGTATGAGATTTTCATGCGGATTCGCCAAGAGGTTGAGAAGTATATCGGTCGCTTGCAGAAGCTGGCTC
GGACTATTGCAACCATCGATGTTTTGCAGGCCTTTGCAGTTGTGGCGGAGCAGCAACATTTGGTTTGTCCACGTTTTACA
GATCAAAGAGAACTGACCATTGACCGTGGTCGTCATGCGGTGGTGGAGAAGGTCATGGGCAAGCAGACCTACATTCCCAA
CTCTATTCACTTGGATACCGATACGCATATGCAACTGATTACTGGTCCAAACATGAGTGGTAAGTCTACCTATATGCGAC
AGTTGGCGGTTATCGTCATCATGGCGCAGATGGGTTCCTATGTACCTGCGGATCAGGCTGAATTACCGATTTTCGATGCT
ATTTTCACCCGAATTGGGGCGGCAGACGACTTGGTTAGTGGTCAATCGACCTTCATGGTCGAAATGATGGAGGCCAATAA
GGCAGTCCGTCTGGCGACAGATCGGTCGCTCATCCTCTTTGATGAGTTGGGACGGGGAACGGCCACCTATGACGGTATGG
CTCTGGCTCAGTCTATCATCGAGTACATCCACGACAAGATTGGAGCCAAGACCCTCTTTGCTACCCACTACCATGAGTTG
ACAGACCTTAGCCAGACCTTGGAACACCTAGAGAATGTCCATGTATCGACCTTGGAGAAGGACGGCCAAGTCACCTTCCT
CCACAAGATTGCCCAAGGTCCAGCTGACAAGTCCTACGGGATTCATGTGGCTAAGATTGCGGGAATGCCAGAGGAACTAT
TGCAGCGGGCGGATAGGATTTTGCAGACGCTTGAAAACCAAGCCCCTACTGCACCAGCTAATCCAGCACCGTCAGTAGTG
GAAGAGCCGTCTGGTCAAATCGACCTCTTCGCAGACACGCCTTCTCACCCAGTCCTTGATGAACTGGAAAAACTAGACAT
CTACAATATGACTCCTATGGAAGTCATGATGGCAGTGGCGGAGTTGAAGAAAAAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

73.995

100

0.74

  mutS Pseudomonas stutzeri strain ATCC 17587

37.863

100

0.385