Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NQZ84_RS09920 Genome accession   NZ_CP102094
Coordinates   2048693..2050663 (-) Length   656 a.a.
NCBI ID   WP_044765464.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2043693..2055663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS09890 (NQZ84_09890) - 2044004..2044537 (-) 534 WP_013730635.1 hypothetical protein -
  NQZ84_RS09895 (NQZ84_09895) - 2044852..2045580 (-) 729 WP_024393378.1 metallophosphoesterase -
  NQZ84_RS09900 (NQZ84_09900) - 2045646..2046995 (-) 1350 WP_012775376.1 glucose-6-phosphate isomerase -
  NQZ84_RS10660 - 2047077..2047619 (-) 543 Protein_1921 hypothetical protein -
  NQZ84_RS09915 (NQZ84_09915) tadA 2047891..2048412 (-) 522 WP_012027934.1 tRNA adenosine(34) deaminase TadA -
  NQZ84_RS09920 (NQZ84_09920) recP/tkt 2048693..2050663 (-) 1971 WP_044765464.1 transketolase Machinery gene
  NQZ84_RS09925 (NQZ84_09925) ulaG 2050875..2051966 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  NQZ84_RS09930 (NQZ84_09930) - 2052076..2053764 (-) 1689 WP_257047696.1 BglG family transcription antiterminator -
  NQZ84_RS09935 (NQZ84_09935) - 2053888..2054505 (-) 618 WP_012775380.1 hypothetical protein -
  NQZ84_RS09940 (NQZ84_09940) - 2054590..2055306 (-) 717 WP_024381206.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70716.58 Da        Isoelectric Point: 4.7793

>NTDB_id=614739 NQZ84_RS09920 WP_044765464.1 2048693..2050663(-) (recP/tkt) [Streptococcus suis strain 12RC1]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQGWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=614739 NQZ84_RS09920 WP_044765464.1 2048693..2050663(-) (recP/tkt) [Streptococcus suis strain 12RC1]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCAGCTCAGCCCAACTGGGTGA
ACCGTGACCGCTTTATTTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCCGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCAGG
TGTAGATGCAACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CGAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACCTACGTAATTTGTGGTGATGGTGACTTGATGGAGGGT
GTTTCAGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGCTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCGGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTATTGCCAACTTTCTTAGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATCCAGTTCGGTGTGCGTGAATTTGCAATGGGAACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTTGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCTGTGACTT
ATGTCTTCACTCATGACTCTATCGCAGTTGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAACGTTTTCCGTCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGAACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACGATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTCAAA
GCTGCCAAAGAATTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
CGCTGCCTACAAGGAAGAAATCCTTCCAAATGCCATCCGTCGTCGCTTGGCAATTGAAATGGGTGCAACTCAAGGTTGGT
ACAAGTATGTCGGCCTTGACGGTAAAGTTCTCGGTATTGACACATTTGGTGCATCAGCTCCAGCCCAAACAGTTATTGAC
AACTATGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.098

100

0.811