Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LG319_RS11305 Genome accession   NZ_CP085027
Coordinates   2280947..2281459 (-) Length   170 a.a.
NCBI ID   WP_011276866.1    Uniprot ID   A0A5B2YXI2
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2275947..2286459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS11270 (LG319_11205) - 2276135..2276764 (-) 630 WP_053025259.1 LysE family translocator -
  LG319_RS11275 (LG319_11210) - 2277223..2277456 (+) 234 WP_053025258.1 hypothetical protein -
  LG319_RS11280 (LG319_11215) - 2277514..2277762 (-) 249 WP_011276862.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  LG319_RS11285 (LG319_11220) - 2277940..2278689 (-) 750 WP_053025257.1 amidohydrolase -
  LG319_RS11290 (LG319_11225) - 2278902..2279159 (+) 258 WP_011276864.1 hypothetical protein -
  LG319_RS11295 (LG319_11230) - 2279363..2280439 (+) 1077 WP_053025256.1 Ltp family lipoprotein -
  LG319_RS11300 (LG319_11235) rpsR 2280657..2280899 (-) 243 WP_002447994.1 30S ribosomal protein S18 -
  LG319_RS11305 (LG319_11240) ssbA 2280947..2281459 (-) 513 WP_011276866.1 single-stranded DNA-binding protein Machinery gene
  LG319_RS11310 (LG319_11245) rpsF 2281481..2281777 (-) 297 WP_011276867.1 30S ribosomal protein S6 -
  LG319_RS11315 (LG319_11250) - 2282068..2282874 (+) 807 WP_053025255.1 glycoside hydrolase family 25 protein -
  LG319_RS11320 (LG319_11255) - 2282940..2283131 (+) 192 WP_011276869.1 hypothetical protein -
  LG319_RS11325 (LG319_11260) ychF 2283273..2284370 (-) 1098 WP_053019363.1 redox-regulated ATPase YchF -
  LG319_RS11330 (LG319_11265) - 2284382..2284585 (-) 204 WP_011276871.1 DUF951 domain-containing protein -
  LG319_RS11335 (LG319_11270) - 2284607..2285353 (-) 747 Protein_2183 mechanosensitive ion channel family protein -
  LG319_RS11340 (LG319_11275) - 2285414..2286088 (-) 675 WP_047211178.1 IS6-like element IS257 family transposase -
  LG319_RS11345 (LG319_11280) - 2286144..2286428 (+) 285 Protein_2185 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18837.38 Da        Isoelectric Point: 4.7306

>NTDB_id=614738 LG319_RS11305 WP_011276866.1 2280947..2281459(-) (ssbA) [Staphylococcus haemolyticus strain SLM-175]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAENVNNYLFKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQSNNNDFQDYGQGFGGQQSGQNTSYNNNNSSNNKQSDNPFANANGP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=614738 LG319_RS11305 WP_011276866.1 2280947..2281459(-) (ssbA) [Staphylococcus haemolyticus strain SLM-175]
ATGATAAACAGAGTTGTATTAGTAGGTCGTTTAACTAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTCATCAATGTTGTTGTAT
TTAGAAGACAAGCAGAGAATGTGAATAATTATTTATTCAAAGGTAGTCTAGCTGGCGTTGATGGTCGCATACAATCACGC
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTTGTAGCAGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCTCAAGGTGGCCAACGTAATCAAAGTAATAACAATGATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAACAATCAG
GACAAAATACGTCTTACAATAATAATAATTCATCAAATAATAAACAATCTGATAATCCATTTGCAAACGCAAACGGACCG
ATTGATATTAGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YXI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.659
  ssb Latilactobacillus sakei subsp. sakei 23K

54.07

100

0.547
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376