Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NQZ84_RS09855 Genome accession   NZ_CP102094
Coordinates   2038145..2038594 (-) Length   149 a.a.
NCBI ID   WP_044693413.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033145..2043594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS09840 (NQZ84_09840) - 2033818..2034447 (+) 630 WP_205029031.1 ABC transporter ATP-binding protein -
  NQZ84_RS09845 (NQZ84_09845) - 2034661..2036445 (-) 1785 WP_257047717.1 ABC transporter ATP-binding protein -
  NQZ84_RS09850 (NQZ84_09850) - 2036446..2038152 (-) 1707 WP_257047714.1 ABC transporter ATP-binding protein -
  NQZ84_RS09855 (NQZ84_09855) rcrR 2038145..2038594 (-) 450 WP_044693413.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NQZ84_RS09860 (NQZ84_09860) - 2038816..2039832 (+) 1017 WP_024408041.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NQZ84_RS09865 (NQZ84_09865) galU 2039848..2040750 (+) 903 WP_023371721.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NQZ84_RS09870 (NQZ84_09870) - 2040768..2041445 (-) 678 WP_172067470.1 rhomboid family intramembrane serine protease -
  NQZ84_RS09875 (NQZ84_09875) - 2041429..2041971 (-) 543 WP_044681860.1 5-formyltetrahydrofolate cyclo-ligase -
  NQZ84_RS09880 (NQZ84_09880) - 2042012..2043139 (-) 1128 WP_257047707.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17578.14 Da        Isoelectric Point: 8.1233

>NTDB_id=614738 NQZ84_RS09855 WP_044693413.1 2038145..2038594(-) (rcrR) [Streptococcus suis strain 12RC1]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=614738 NQZ84_RS09855 WP_044693413.1 2038145..2038594(-) (rcrR) [Streptococcus suis strain 12RC1]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTGGCCG
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416