Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NQZ84_RS09800 Genome accession   NZ_CP102094
Coordinates   2025990..2027357 (-) Length   455 a.a.
NCBI ID   WP_024377772.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020990..2032357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS10640 - 2024062..2024142 (-) 81 Protein_1897 hypothetical protein -
  NQZ84_RS09790 (NQZ84_09790) - 2024405..2025163 (-) 759 WP_024386084.1 TIGR00266 family protein -
  NQZ84_RS09795 (NQZ84_09795) - 2025372..2025866 (-) 495 WP_024403073.1 beta-class carbonic anhydrase -
  NQZ84_RS09800 (NQZ84_09800) radA 2025990..2027357 (-) 1368 WP_024377772.1 DNA repair protein RadA Machinery gene
  NQZ84_RS09805 (NQZ84_09805) - 2027364..2027897 (-) 534 WP_257047723.1 histidine phosphatase family protein -
  NQZ84_RS09810 (NQZ84_09810) - 2027904..2028347 (-) 444 WP_257047722.1 dUTP diphosphatase -
  NQZ84_RS09815 (NQZ84_09815) - 2028367..2029353 (-) 987 WP_257047721.1 virulence RhuM family protein -
  NQZ84_RS09820 (NQZ84_09820) - 2029372..2029908 (-) 537 WP_257047720.1 hypothetical protein -
  NQZ84_RS09825 (NQZ84_09825) - 2030002..2030868 (-) 867 WP_257047719.1 helix-turn-helix domain-containing protein -
  NQZ84_RS09830 (NQZ84_09830) - 2031207..2031491 (+) 285 WP_205032905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49845.30 Da        Isoelectric Point: 6.1911

>NTDB_id=614737 NQZ84_RS09800 WP_024377772.1 2025990..2027357(-) (radA) [Streptococcus suis strain 12RC1]
MTIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=614737 NQZ84_RS09800 WP_024377772.1 2025990..2027357(-) (radA) [Streptococcus suis strain 12RC1]
ATGACCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGTCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTTGCGGAAGTCAAAAATGAGCGGGTCAGCCTGACAGGTG
AGAAAACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACTAAGACCAATATGGAGGAGTTTAAC
CGCGTCTTAGGTGGTGGAGTGGTGCCGGGCAGTCTGGTCCTGATCGGAGGCGATCCAGGGATTGGTAAGTCTACCTTGCT
CCTGCAAGTATCCACTCAGCTGTCTACCATTGGCACCGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGC
TCCGTGCCGAGCGTTTGGGCGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACTGAG
ATTGAGAAAATTAAGCCAGATTTCCTGATTATCGACTCTATCCAGACCATCATGAGCCCTGACATCTCCAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGTACTCTGGCTGGACCTCGGACCTTGGAGCATATGGTAGACACCGTTCTTTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGTTTCGGTTCTACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGTGAGGTCTTTCTGGAAGAGCGTTTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCCGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTTAAGTCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGACGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAACTAGGCTTTACCAAGGTCTATGCCCCTAAAAA
TTCCCTGACAGGTATCAAGGTACCAAAGGAAATCACTGTTGTCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(64-220)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622