Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG319_RS10550 Genome accession   NZ_CP085027
Coordinates   2141172..2142545 (-) Length   457 a.a.
NCBI ID   WP_053025232.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2136172..2147545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS10535 (LG319_10475) cysE 2137103..2137732 (-) 630 WP_176743849.1 serine O-acetyltransferase -
  LG319_RS10540 (LG319_10480) gltX 2138189..2139643 (-) 1455 WP_053025234.1 glutamate--tRNA ligase -
  LG319_RS10545 (LG319_10485) - 2140088..2141155 (-) 1068 WP_053025233.1 PIN/TRAM domain-containing protein -
  LG319_RS10550 (LG319_10490) radA 2141172..2142545 (-) 1374 WP_053025232.1 DNA repair protein RadA Machinery gene
  LG319_RS10555 (LG319_10495) - 2142768..2145242 (-) 2475 WP_037552093.1 ATP-dependent Clp protease ATP-binding subunit -
  LG319_RS10560 (LG319_10500) - 2145258..2146265 (-) 1008 WP_053025231.1 protein arginine kinase -
  LG319_RS10565 (LG319_10505) - 2146258..2146821 (-) 564 WP_011276738.1 UvrB/UvrC motif-containing protein -
  LG319_RS10570 (LG319_10510) - 2146844..2147305 (-) 462 WP_037552095.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50269.68 Da        Isoelectric Point: 7.2132

>NTDB_id=614736 LG319_RS10550 WP_053025232.1 2141172..2142545(-) (radA) [Staphylococcus haemolyticus strain SLM-175]
MAKKKVIFECMACGYQSPKWMGKCPNCGSWNQMEEIVEKASNPKHGVKTSTSTAKVQKLNDIKNEVTPRVQTESKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLDEDSSNLNVLAETDLEVIHQTVQ
QAQPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVHNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFERVIIPQTNIGGWQFPEGIKVVGVSTVHDALKYAFKSYIK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=614736 LG319_RS10550 WP_053025232.1 2141172..2142545(-) (radA) [Staphylococcus haemolyticus strain SLM-175]
TTGGCCAAAAAGAAAGTAATTTTTGAGTGTATGGCTTGCGGCTATCAATCTCCAAAATGGATGGGAAAGTGTCCTAATTG
TGGGTCATGGAATCAAATGGAGGAAATTGTTGAAAAAGCTTCAAATCCTAAACACGGCGTAAAGACATCAACGTCTACCG
CAAAAGTCCAGAAATTAAATGATATCAAGAATGAAGTAACACCGAGAGTTCAGACAGAATCAAAAGAGTTCAACCGCGTT
TTAGGTGGTGGCATTGTGAGTGGTTCTTTAGTGTTAATAGGTGGAGATCCTGGTATCGGTAAATCAACGTTATTACTGCA
AATTTGTGCATCATTGTCACAAAAATTAAATGTACTGTATATTACAGGTGAAGAATCACTAAATCAAACTAAATTACGCG
CCGATCGACTAGATGAAGATTCGAGTAATTTAAATGTGTTAGCAGAAACAGATTTAGAGGTAATACATCAAACAGTTCAA
CAAGCACAACCTGATATTTTAGTTGTGGATTCCATTCAAACAATATATCATCCTGAAATTAGTTCGGCACCTGGTTCTGT
GTCTCAAGTTAGAGAAAGTACACAGAGTTTAATGAATATTGCTAAACAAATGAATATTGCAACATTTATCGTCGGACATG
TTACAAAAGAAGGTCAAATTGCAGGACCGCGTCTATTAGAACATATGGTTGATACTGTACTGTACTTTGAGGGAGATGAG
CATCATGCTTATCGTATCTTGAGAGCGGTTAAGAACCGTTTTGGTTCTACTAATGAAATGGGCATTTTTGAGATGAAACA
AAGCGGGTTAAAAGGCGTTCATAATCCTTCTGAAATGTTCTTAGAGGAACGTTCTACCAATGTGCCGGGATCAACGATTG
TAGCAACTATGGAAGGTACACGACCTCTATTAATAGAAGTTCAGGCCTTAGTGACGCCTACAACATTTAATAACCCTAGA
CGTATGGCAACAGGTATAGATCATAATCGTTTGAGTTTATTAATGGCTGTATTAGAGAAAAAAGAAAACTATTTATTACA
ACAACAAGATGCATATATTAAAGTAGCTGGTGGCGTTCGATTGACAGAGCCGGCAGTTGATTTAAGTGTTATAGTAGCAA
CAGCTTCAAGTTTTAAAGATAAAGCAGTAGATGGGCTTGATTGTTATATTGGAGAAGTAGGTTTGACCGGTGAAGTGAGA
CGTGTTTCTCGAATTGAACAACGTGTTCAAGAAGCAGCTAAATTAGGCTTTGAACGTGTTATTATTCCACAGACAAATAT
CGGTGGATGGCAATTTCCTGAGGGCATTAAAGTAGTAGGAGTGTCTACAGTACATGATGCACTAAAATATGCATTCAAAT
CGTATATAAAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)

AAA domain (AAA_25)

(67-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.781

0.652
  radA Streptococcus pneumoniae Rx1

60.177

98.906

0.595
  radA Streptococcus pneumoniae D39

60.177

98.906

0.595
  radA Streptococcus pneumoniae R6

60.177

98.906

0.595
  radA Streptococcus pneumoniae TIGR4

60.177

98.906

0.595
  radA Streptococcus mitis NCTC 12261

60.177

98.906

0.595
  radA Streptococcus mitis SK321

60.177

98.906

0.595