Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG295_RS12195 Genome accession   NZ_CP085024
Coordinates   2534707..2536077 (-) Length   456 a.a.
NCBI ID   WP_404475985.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2529707..2541077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS12180 (LG295_12175) cysE 2530693..2531343 (-) 651 WP_107530615.1 serine O-acetyltransferase -
  LG295_RS12185 (LG295_12180) gltX 2531687..2533141 (-) 1455 WP_404475983.1 glutamate--tRNA ligase -
  LG295_RS12190 (LG295_12185) - 2533567..2534625 (-) 1059 WP_107530617.1 PIN/TRAM domain-containing protein -
  LG295_RS12195 (LG295_12190) radA 2534707..2536077 (-) 1371 WP_404475985.1 DNA repair protein RadA Machinery gene
  LG295_RS12200 (LG295_12195) - 2536418..2538880 (-) 2463 WP_107530618.1 ATP-dependent Clp protease ATP-binding subunit -
  LG295_RS12205 (LG295_12200) - 2538894..2539904 (-) 1011 WP_404475986.1 protein arginine kinase -
  LG295_RS12210 (LG295_12205) - 2539897..2540448 (-) 552 WP_042363311.1 UvrB/UvrC motif-containing protein -
  LG295_RS12215 (LG295_12210) - 2540465..2540926 (-) 462 WP_318832353.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50407.88 Da        Isoelectric Point: 7.0057

>NTDB_id=614704 LG295_RS12195 WP_404475985.1 2534707..2536077(-) (radA) [Staphylococcus pseudoxylosus strain SLM-183]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEIVEQKAASPKHGVRSRDNISKVQKLNDIKHETTPRVKTNSEEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSKNVLYITGEESLNQTKLRAERLDEDSSELNVFAETDLEVIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQLNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMQQTGLKGVKNPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDLTVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAEKLGFKRVIIPESNIGGWQFPNDIKVIGVKNVHEALKYALTKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=614704 LG295_RS12195 WP_404475985.1 2534707..2536077(-) (radA) [Staphylococcus pseudoxylosus strain SLM-183]
TTGGCTAAAAAGAAAGTGATTTTTGAATGTATGGCCTGTGGTTACCAGTCTCCAAAGTGGATGGGGAAATGCCCAAACTG
TGGCGGTTGGAATCAAATGGAAGAAATAGTCGAACAAAAGGCTGCGAGTCCAAAACATGGCGTACGCAGTCGAGACAATA
TTTCTAAAGTACAAAAATTAAATGACATTAAACATGAAACAACGCCACGAGTAAAAACAAACTCCGAAGAGTTTAATAGA
GTGCTCGGCGGCGGTATAGTAAATGGTTCGCTCGTATTGATAGGTGGCGATCCAGGTATTGGTAAATCTACATTACTTTT
ACAAATTTGTGCAGCATTATCACAATCTAAAAATGTGTTGTATATTACAGGTGAGGAATCATTAAATCAAACGAAATTAA
GAGCAGAAAGATTAGATGAGGACTCAAGTGAATTAAATGTGTTTGCTGAAACAGATTTAGAAGTTATACATGAAACAGTT
AAGCAACTCAAGCCAGATCTACTTGTAGTAGACTCAATCCAAACTATTTTCCATCCAGAAATTAGTTCGGCGCCAGGTTC
TGTGTCGCAAGTTAGAGAAAGTACGCAAAGTTTAATGAATATAGCGAAACAATTGAATATAGCTACATTTATAGTGGGAC
ATGTTACGAAAGAAGGCCAAATAGCTGGTCCGCGTTTACTTGAACATATGGTAGATACAGTCCTTTACTTCGAAGGCGAT
GAGCATCACGCGTATCGTATTTTAAGAGCAGTTAAAAACCGTTTTGGCTCTACGAATGAGATGGGTATTTTTGAGATGCA
GCAAACAGGATTAAAGGGAGTTAAGAACCCGTCGGAAATGTTTCTTGAAGAACGTTCGACTAATGTACCTGGTTCAACTA
TTGTTTCTACAATGGAAGGCACGAGACCATTACTTATAGAAGTACAAGCGTTAGTGACGCCAACTACATTTAATAATCCA
AGGCGTATGGCGACAGGGATCGATCATAATCGATTGAGTCTGCTTATGGCAGTGTTAGAAAAGAAAGAGAATTATTTATT
ACAACAACAGGACGCTTATATAAAAGTGGCAGGTGGTGTACGTTTAACAGAACCAGCTGTAGATTTAGGTATTGTTGTTG
CAACAGCATCAAGTTTTAAAGATTTAACAGTCGATGGTTTAGACTGCTTTATTGGAGAAGTAGGACTCACAGGAGAAGTT
AGACGAGTTTCTCGTATAGAACAACGTGTACAAGAAGCGGAAAAATTAGGATTTAAGCGTGTGATTATTCCGGAATCAAA
TATTGGTGGATGGCAATTTCCAAATGACATCAAGGTCATTGGTGTTAAGAATGTCCATGAAGCTTTAAAATATGCACTAA
CAAAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

100

0.654
  radA Streptococcus pneumoniae Rx1

60.222

98.684

0.594
  radA Streptococcus pneumoniae D39

60.222

98.684

0.594
  radA Streptococcus pneumoniae R6

60.222

98.684

0.594
  radA Streptococcus pneumoniae TIGR4

60.222

98.684

0.594
  radA Streptococcus mitis NCTC 12261

60.222

98.684

0.594
  radA Streptococcus mitis SK321

60.222

98.684

0.594