Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQZ84_RS05090 Genome accession   NZ_CP102094
Coordinates   1027708..1029477 (-) Length   589 a.a.
NCBI ID   WP_044674972.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022708..1034477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS05070 (NQZ84_05070) murB 1023331..1024239 (-) 909 WP_015646881.1 UDP-N-acetylmuramate dehydrogenase -
  NQZ84_RS05075 (NQZ84_05075) thrB 1024473..1025333 (-) 861 WP_002938588.1 homoserine kinase -
  NQZ84_RS05080 (NQZ84_05080) - 1025337..1026623 (-) 1287 WP_257047353.1 homoserine dehydrogenase -
  NQZ84_RS05085 (NQZ84_05085) - 1026728..1027651 (+) 924 WP_024390336.1 polysaccharide deacetylase family protein -
  NQZ84_RS05090 (NQZ84_05090) rcrQ 1027708..1029477 (-) 1770 WP_044674972.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS05095 (NQZ84_05095) rcrP 1029486..1031222 (-) 1737 WP_044681591.1 ABC transporter ATP-binding protein Regulator
  NQZ84_RS05100 (NQZ84_05100) - 1031298..1031540 (-) 243 WP_012028079.1 KH domain-containing protein -
  NQZ84_RS05105 (NQZ84_05105) rpsP 1031562..1031834 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  NQZ84_RS05110 (NQZ84_05110) - 1031959..1032267 (-) 309 WP_052506794.1 DUF4298 domain-containing protein -
  NQZ84_RS05115 (NQZ84_05115) pcp 1032267..1032914 (-) 648 WP_024379909.1 pyroglutamyl-peptidase I -
  NQZ84_RS05120 (NQZ84_05120) - 1032911..1033672 (-) 762 WP_044752139.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65799.69 Da        Isoelectric Point: 5.1568

>NTDB_id=614697 NQZ84_RS05090 WP_044674972.1 1027708..1029477(-) (rcrQ) [Streptococcus suis strain 12RC1]
MKNRSVFTRVWDYLRRYQSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGLSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTESLTGQVSFENVEFGYSEDKPLIRNFNLDVQPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=614697 NQZ84_RS05090 WP_044674972.1 1027708..1029477(-) (rcrQ) [Streptococcus suis strain 12RC1]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGT
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTTCAGTTGGTTAATGCTGTCTTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTGTCATTAGCTCTCGTAGTCGTGACCTTGGTTCCAGTGACTTATTTTGG
CTCCAAGTTTGTCATGGGCAAATCCCAGCCTTATTTCAAACAGCAGGCGGATGCCCTCGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTCACAGGCTTCAACGTCCTCAAGCTCTACGGCCGTGAAGAAATTTCTACAGAAGAATTTCGCCAGATAACT
GCTGACTTGCAGGAAGTTGGTTTCAAGGCTAGTTTTATGTCTGGTTTGCTCATGCCTCTGGTTCATGGCTTGTCAAATAT
CGCCTATGTCGTCGTCGCCCTGCTTTCTGGTCTGAAAGTACTTGCAGGTACATTGACAGTAGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAGCTTGACGAAGAAGACGCCAATGCGCTTGAGTTGACAGAAAGTCTGACTGG
ACAAGTTAGCTTCGAAAATGTCGAATTTGGTTATTCAGAAGACAAGCCGCTCATCCGTAACTTTAATCTGGATGTTCAAC
CCGGTGAGATGGTGGCTATCGTTGGACCAACGGGGGCAGGTAAGACTACTCTTATCAACTTGCTCATGCGTTTCTACGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCTCGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCACTTTATCCGTACCCTGCCTGGCGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACTATTGCACGTGCCTTGTTGGCAGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCTATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGATAAAGGTTTCTATTATAATCTGTATCAAAGTCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436