Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   LG295_RS04915 Genome accession   NZ_CP085024
Coordinates   1052721..1053437 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1047721..1058437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS04890 (LG295_04885) - 1048228..1048452 (+) 225 WP_017723427.1 sulfurtransferase TusA family protein -
  LG295_RS04895 (LG295_04890) - 1048811..1048996 (-) 186 WP_107558549.1 hypothetical protein -
  LG295_RS04900 (LG295_04895) - 1049192..1050154 (+) 963 WP_318832734.1 LacI family DNA-binding transcriptional regulator -
  LG295_RS04905 (LG295_04900) - 1050239..1051723 (+) 1485 WP_107531429.1 sucrose-6-phosphate hydrolase -
  LG295_RS04910 (LG295_04905) - 1051720..1052685 (+) 966 WP_107531428.1 carbohydrate kinase -
  LG295_RS04915 (LG295_04910) agrA 1052721..1053437 (-) 717 WP_029378924.1 quorum-sensing response regulator AgrA Regulator
  LG295_RS04920 (LG295_04915) agrC 1053450..1054745 (-) 1296 WP_318832735.1 quorum-sensing sensor histidine kinase AgrC -
  LG295_RS04925 (LG295_04920) agrD 1054771..1054920 (-) 150 WP_318832736.1 cyclic lactone autoinducer peptide AgrD -
  LG295_RS04930 (LG295_04925) - 1054923..1055492 (-) 570 WP_318832737.1 accessory gene regulator AgrB -
  LG295_RS04935 (LG295_04930) - 1056259..1057044 (-) 786 WP_107531425.1 carbon-nitrogen family hydrolase -
  LG295_RS04940 (LG295_04935) - 1057416..1058045 (-) 630 WP_318832738.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=614681 LG295_RS04915 WP_029378924.1 1052721..1053437(-) (agrA) [Staphylococcus pseudoxylosus strain SLM-183]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=614681 LG295_RS04915 WP_029378924.1 1052721..1053437(-) (agrA) [Staphylococcus pseudoxylosus strain SLM-183]
ATGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTCTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCAACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGACATTCAACTAGAAGCTGACATCAATGGTATCAAGCTTGCAAGTGAAATACGCAAGCATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAATCGCGATTAAAACTAC
TTTCAAAAGAAAGTAGTGTCGAAACAATAGAATTAAAACGTGGTAGTAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTTGAATCATCTAGCAAATCCCATCGTTTAATTGCACATCTCGATAATCGTCAAATCGAATTCTATGGAAACCTAAA
AGAAATTGATCAGTTAGATAAACGTTTCTTTAGATGTCATAATAGTTTCGTAGTTAATAGACACAATATCGAATCCATCG
ACTCAAAATCACGCGTAGTTTATTTTAAAAACAATGAACATTGTTATGCGTCTGTAAGAAACGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849