Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   NQZ84_RS01965 Genome accession   NZ_CP102094
Coordinates   387840..389939 (+) Length   699 a.a.
NCBI ID   WP_044752425.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 382840..394939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS01945 (NQZ84_01945) - 383554..384252 (+) 699 WP_044680763.1 ion transporter -
  NQZ84_RS01950 (NQZ84_01950) - 384321..385049 (+) 729 WP_044752426.1 MerR family transcriptional regulator -
  NQZ84_RS01955 (NQZ84_01955) - 385108..386796 (+) 1689 WP_228476376.1 P-loop NTPase fold protein -
  NQZ84_RS01960 (NQZ84_01960) - 386793..387203 (+) 411 WP_044680761.1 peptide deformylase -
  NQZ84_RS01965 (NQZ84_01965) clpC 387840..389939 (+) 2100 WP_044752425.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  NQZ84_RS01970 (NQZ84_01970) malQ 390122..391630 (+) 1509 WP_044752424.1 4-alpha-glucanotransferase -
  NQZ84_RS01975 (NQZ84_01975) glgP 391623..393887 (+) 2265 WP_257049539.1 glycogen/starch/alpha-glucan family phosphorylase -
  NQZ84_RS01980 (NQZ84_01980) - 394116..394823 (-) 708 WP_044680757.1 UTRA domain-containing protein -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 77306.16 Da        Isoelectric Point: 4.8273

>NTDB_id=614672 NQZ84_RS01965 WP_044752425.1 387840..389939(+) (clpC) [Streptococcus suis strain 12RC1]
MNNNFNNFNNMDDIFNQLMGNMGGYSTERRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQAQTKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLTVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFA

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=614672 NQZ84_RS01965 WP_044752425.1 387840..389939(+) (clpC) [Streptococcus suis strain 12RC1]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGATATTTTCAATCAACTCATGGGCAACATGGGTGGCTACAGCAC
AGAACGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTCGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAGCACAGACTAAAGGTCAGATAAAGTCAGACGGAATTCTTGCAAAACTTGGTCGCAAT
TTGACCCAAGATGCGCGTGAAGGGAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATCCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACTAAGAACAATCCTGTTTTGGTCGGTGATGCTGGTGTTGGTAAAACTGCGGTAGTGGAAGGTTTGGCTC
AAGCTATTGTCAATGGAGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGATTGGAAGCT
GGGACTCAGTATCGTGGTGCTTTTGAGGAAAATGTGCAGAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGCGGAGACTCAGGTTCCAAGGGGTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACGCAGGACGAATACCGCAATACTATTCACAAG
AATGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAAGACACCTACCAGATTTTGAAAGG
GATTAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCCGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGATCGATGTGACCGCTGCACACTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTAGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGGATGACAGGCATCCCAGTCTCGCAAATGGGAGCTTCTGAT
ATTGAACGACTCAAGGAATTGAAAAATCGTCTAGCAGCTAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGGAATCGTGCAGGTTTTGATGATGGCAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGTGTCCGCCGCAATCCGTACTCAATCGTTCTTCTGGATGAGATTGAAAAAGCTGATCCACAAGTGATTA
CCCTTCTCTTGCAAGTACTAGATGACGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACCATTATT
ATCGCGACTTCTAATGCTGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCGCC
ATTCTTCCGTCCGGAGTTTCTCAATCGTTTTAACGCAGTTATCGAATTCAAGCACTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAACGGTAACGGAAGCTGCCAAA
GAATTCTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGAGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGCTTAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(116-249)

AAA domain (Cdc48 subfamily) (AAA_2)

(441-599)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(606-676)

AAA lid domain (AAA_lid_9)

(257-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

47.376

100

0.478
  clpE Streptococcus pneumoniae Rx1

47

100

0.471
  clpE Streptococcus pneumoniae D39

47

100

0.471
  clpE Streptococcus pneumoniae R6

47

100

0.471
  clpE Streptococcus pneumoniae TIGR4

47

100

0.471
  clpE Streptococcus mutans UA159

49.766

91.702

0.456
  clpC Bacillus subtilis subsp. subtilis str. 168

44.737

92.418

0.413
  clpC Streptococcus pneumoniae Rx1

41.766

95.565

0.399
  clpC Streptococcus pneumoniae D39

41.766

95.565

0.399
  clpC Streptococcus pneumoniae TIGR4

41.529

95.422

0.396
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

41.096

93.991

0.386
  clpC Streptococcus mutans UA159

43.366

88.412

0.383
  clpC Streptococcus thermophilus LMD-9

42.72

89.413

0.382
  clpC Streptococcus thermophilus LMG 18311

42.56

89.413

0.381