Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NQZ84_RS00215 Genome accession   NZ_CP102094
Coordinates   29808..30590 (+) Length   260 a.a.
NCBI ID   WP_044684959.1    Uniprot ID   -
Organism   Streptococcus suis strain 12RC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24808..35590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS00195 (NQZ84_00195) mreD 25656..26144 (+) 489 WP_014637249.1 rod shape-determining protein MreD -
  NQZ84_RS00200 (NQZ84_00200) pcsB 26229..27485 (+) 1257 WP_257048947.1 peptidoglycan hydrolase PcsB -
  NQZ84_RS00205 (NQZ84_00205) - 27588..28556 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  NQZ84_RS00210 (NQZ84_00210) - 28643..29821 (+) 1179 WP_023368972.1 pyridoxal phosphate-dependent aminotransferase -
  NQZ84_RS00215 (NQZ84_00215) recO 29808..30590 (+) 783 WP_044684959.1 DNA repair protein RecO Machinery gene
  NQZ84_RS00220 (NQZ84_00220) plsX 30587..31594 (+) 1008 WP_257048953.1 phosphate acyltransferase PlsX -
  NQZ84_RS00225 (NQZ84_00225) - 31587..31835 (+) 249 WP_014637254.1 phosphopantetheine-binding protein -
  NQZ84_RS00230 (NQZ84_00230) purC 31953..32660 (+) 708 WP_014637255.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30353.81 Da        Isoelectric Point: 5.2102

>NTDB_id=614648 NQZ84_RS00215 WP_044684959.1 29808..30590(+) (recO) [Streptococcus suis strain 12RC1]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKSKLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEILTNIFEIQLLGRFGISLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDDLETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPGTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=614648 NQZ84_RS00215 WP_044684959.1 29808..30590(+) (recO) [Streptococcus suis strain 12RC1]
ATGGAACGAATTGAAACCAGGGGATTAGTCCTATATAATCGGAATTTTAGAGAAGATGACAAGCTGGTCAAGATTTTTAC
AGAGAAGGCAGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAATCCAAGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTTAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAGGTACAGCCCTTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTATATCTTGGCCTTGGCCGATGCGGCCTTGCAGGACAAGGTTTA
TGACCCAGCCCTCTTTGCATTTTTGGTCAAGACCTTGGATTTGATGGAGTCAGGTTTGGACTATGAAATTTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGTCGATTTGGGATCAGTCTGAATTTTCACGAGTGTGCTTTTTGTCATCGGGTTGGCTTA
CCTTTTGACTATTCCTACAAGTATAGCGGTGTCTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGATTTGGAAACTATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAGGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

69.323

96.538

0.669