Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG282_RS15725 Genome accession   NZ_CP085020
Coordinates   3071713..3073401 (-) Length   562 a.a.
NCBI ID   WP_251162028.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3066713..3078401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS15710 (LG282_15595) - 3068859..3069098 (+) 240 WP_095373649.1 DUF2627 domain-containing protein -
  LG282_RS15715 (LG282_15600) spo0A 3069174..3069968 (-) 795 WP_224936020.1 sporulation transcription factor Spo0A -
  LG282_RS15720 (LG282_15605) spoIVB 3070310..3071599 (-) 1290 WP_404292289.1 SpoIVB peptidase -
  LG282_RS15725 (LG282_15610) recN 3071713..3073401 (-) 1689 WP_251162028.1 DNA repair protein RecN Machinery gene
  LG282_RS15730 (LG282_15615) ahrC 3073419..3073868 (-) 450 WP_095372619.1 transcriptional regulator AhrC/ArgR -
  LG282_RS15735 (LG282_15620) - 3074114..3074950 (-) 837 WP_224936205.1 TlyA family RNA methyltransferase -
  LG282_RS15740 (LG282_15625) dxs 3074955..3076847 (-) 1893 WP_224936017.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG282_RS15745 (LG282_15630) - 3076965..3077855 (-) 891 WP_224936016.1 polyprenyl synthetase family protein -
  LG282_RS15750 (LG282_15635) - 3077861..3078094 (-) 234 WP_095372615.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63975.30 Da        Isoelectric Point: 5.0597

>NTDB_id=614619 LG282_RS15725 WP_251162028.1 3071713..3073401(-) (recN) [Cytobacillus kochii strain SLM-180]
MLNEISIRNFAIIESITIAFNKGLTVLSGETGAGKSIIIDAVHLLVGGRGSSEYVRHGEEKAEIEGLFILDDEQHPCYKR
ALEFGIDIDEGMLILRRDISKSGKSVCRINGKLVTISILREIGSTLIDIHGQHEHQELMNESLHLPLLDQFGGTKIAKSR
QEYEEVYREYEQTMKRIKTLTENEQQMAHRLDLIQFQYEEITNANLKLLEDDALLEERNRLLNFEKMYEGVKISYNALQG
EQKGLDWISLAMNHLQQSAEVDEELVELQEVVANSFYQLEDTVAILRSKLDFMEFDPVRLNEIEERLNEINMLKRKYGPS
IEEILEYVAKIEEEIETLTNKETHIEHLLKQAKELQADLLVEGQELSELRRNAAERLTKMIHRELKALYMEKTVFEVHFT
TDKESFHKKGIDTVEFYLSTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
QVAIDSQVLCISHLPQVAAMADTHLFISKTLKAGRTKTTVKPLDDEEKIKEIGRMISGVEMTELTREHAKELLSLAKNVK
IP

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=614619 LG282_RS15725 WP_251162028.1 3071713..3073401(-) (recN) [Cytobacillus kochii strain SLM-180]
GTGTTAAATGAAATATCAATTAGAAACTTTGCTATTATCGAATCAATCACAATTGCCTTTAATAAAGGGCTAACTGTGCT
TTCAGGAGAAACAGGAGCAGGAAAATCAATTATTATTGACGCCGTTCACCTGCTCGTTGGTGGCAGGGGTTCTTCAGAGT
ATGTAAGACATGGTGAAGAGAAAGCCGAGATAGAAGGTTTATTCATATTAGATGATGAACAACATCCGTGTTACAAACGG
GCGTTAGAATTTGGTATAGATATCGATGAAGGAATGTTGATTCTGCGACGAGATATATCTAAATCAGGTAAAAGTGTCTG
TCGAATAAATGGAAAACTTGTAACCATTTCTATCCTTCGAGAAATTGGTAGTACGCTAATTGACATACATGGTCAACATG
AACACCAAGAATTAATGAATGAAAGTTTGCATCTGCCTTTATTAGATCAATTTGGTGGTACCAAAATCGCTAAAAGTAGA
CAAGAATACGAAGAGGTCTATAGAGAATACGAGCAAACAATGAAAAGAATCAAGACATTAACAGAAAATGAACAGCAAAT
GGCTCATCGACTGGATCTTATTCAATTTCAATATGAAGAAATAACAAACGCCAATTTAAAATTGCTTGAAGATGATGCCC
TCCTAGAAGAGCGAAACCGCTTACTTAATTTTGAGAAGATGTATGAAGGCGTAAAAATTAGCTATAATGCCTTGCAAGGA
GAACAAAAAGGGCTTGATTGGATTAGTTTAGCTATGAATCACCTTCAACAATCGGCAGAAGTTGATGAAGAGTTAGTTGA
GTTGCAAGAAGTAGTTGCTAACAGTTTTTATCAATTAGAGGACACGGTAGCTATTTTAAGGAGTAAATTAGATTTTATGG
AATTTGATCCTGTTCGATTGAATGAAATTGAAGAGCGATTAAATGAAATCAATATGCTCAAACGAAAATATGGACCATCA
ATAGAGGAAATATTAGAATATGTTGCAAAGATTGAGGAAGAAATTGAAACATTAACCAACAAAGAAACACATATCGAACA
CTTGCTCAAGCAGGCTAAAGAATTACAAGCTGATTTACTTGTCGAAGGACAGGAATTGAGTGAATTAAGAAGAAATGCTG
CGGAACGATTAACAAAAATGATTCATCGTGAATTAAAAGCACTTTATATGGAAAAGACTGTATTTGAGGTCCATTTTACT
ACGGATAAAGAAAGCTTTCATAAAAAAGGTATTGATACAGTCGAATTTTACTTATCCACTAACCCAGGAGAACCGTTAAA
ACCATTATCAAAAATTGCATCAGGTGGGGAACTATCCCGAATTATGCTTGCTTTAAAGAGTATCTTTTCTAAACATCAAG
GGGTAACATCTATTATCTTTGATGAAGTTGATACAGGGGTAAGCGGAAGAGTCGCACAAGCTATTGCTGAAAAAATTCAT
CAAGTAGCGATTGATTCGCAAGTTCTTTGCATTTCCCACTTGCCACAAGTGGCTGCAATGGCAGATACGCATTTATTTAT
TTCTAAAACACTCAAAGCTGGCCGTACAAAAACAACGGTAAAGCCGTTGGATGACGAGGAAAAGATTAAAGAAATTGGTC
GTATGATCTCTGGTGTGGAAATGACTGAACTGACAAGGGAGCATGCGAAGGAACTACTGAGCCTTGCCAAAAATGTAAAA
ATACCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.537

100

0.598