Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG282_RS08660 Genome accession   NZ_CP085020
Coordinates   1628165..1629130 (+) Length   321 a.a.
NCBI ID   WP_404294072.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623165..1634130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS08640 (LG282_08575) clpB 1623306..1625900 (+) 2595 WP_404294068.1 ATP-dependent chaperone ClpB -
  LG282_RS08645 (LG282_08580) - 1625987..1626178 (-) 192 WP_224937731.1 YjzD family protein -
  LG282_RS08650 (LG282_08585) - 1626401..1627135 (+) 735 WP_224937732.1 hydrolase -
  LG282_RS08655 (LG282_08590) - 1627284..1628045 (+) 762 WP_404294070.1 hypothetical protein -
  LG282_RS08660 (LG282_08595) med 1628165..1629130 (+) 966 WP_404294072.1 BMP family ABC transporter substrate-binding protein Regulator
  LG282_RS08665 (LG282_08600) comZ 1629143..1629334 (+) 192 WP_191814887.1 ComZ family protein Regulator
  LG282_RS08670 (LG282_08605) - 1629363..1629617 (-) 255 WP_224937735.1 hypothetical protein -
  LG282_RS08675 (LG282_08610) - 1629856..1630788 (+) 933 WP_224937736.1 beta-ketoacyl-ACP synthase III -
  LG282_RS08680 (LG282_08615) fabF 1630835..1632073 (+) 1239 WP_224937737.1 beta-ketoacyl-ACP synthase II -
  LG282_RS08685 (LG282_08620) - 1632213..1632995 (+) 783 WP_404294074.1 DUF2268 domain-containing protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35465.97 Da        Isoelectric Point: 4.6069

>NTDB_id=614604 LG282_RS08660 WP_404294072.1 1628165..1629130(+) (med) [Cytobacillus kochii strain SLM-180]
MKKALIRWGSLVLCLLLLSSCGQVFSGGQLQKAGLLVPDTINDQVWGTKGYKGLLKIQSTYDIDVYYKEGMNSQLVVERA
VKEFSKKGVNLIFGHGNEYAEYFNQISAQYPNIQFVSFNGDAQNENTTSLNFEGYAMGFFGGMVAGEMTATNIVGIIAAF
EWQPEVKGFIDGVNFQNDEADVKIHYVENWDDAHKAAGLMDKLVIEKADVVYPAGDGYNVPVIEKVKEHGLYAIGYVSDQ
SHLGKSAVLTSTIQHVDHLYEIVAEQFHNGELQSGNLSFDFQEDVISLGAYSPELSPTFIQQLNTAVKKYKETGNLPTEP
S

Nucleotide


Download         Length: 966 bp        

>NTDB_id=614604 LG282_RS08660 WP_404294072.1 1628165..1629130(+) (med) [Cytobacillus kochii strain SLM-180]
ATGAAGAAAGCTTTAATTAGGTGGGGGAGTTTGGTTCTATGCCTTCTCTTATTATCGTCATGTGGACAGGTATTTTCTGG
GGGTCAGCTGCAAAAGGCTGGCTTATTAGTGCCGGATACCATTAATGATCAAGTGTGGGGTACGAAAGGGTATAAAGGCC
TACTCAAGATACAGTCTACTTATGATATTGATGTGTATTATAAAGAAGGGATGAACTCACAACTCGTTGTCGAAAGAGCG
GTAAAGGAATTTTCAAAAAAAGGGGTCAATTTAATTTTCGGACATGGAAATGAATATGCAGAGTACTTTAATCAAATATC
AGCACAATATCCAAATATTCAGTTTGTAAGCTTTAACGGGGACGCACAAAATGAAAATACGACAAGTTTAAATTTTGAAG
GCTATGCAATGGGCTTTTTCGGAGGTATGGTGGCTGGTGAGATGACAGCTACTAATATTGTTGGTATTATTGCGGCATTT
GAATGGCAACCAGAAGTAAAAGGTTTTATTGATGGTGTGAACTTTCAAAATGATGAAGCAGATGTTAAAATACATTATGT
TGAAAATTGGGATGATGCCCATAAGGCTGCAGGGTTAATGGACAAGTTGGTCATAGAAAAAGCAGATGTCGTTTATCCAG
CAGGTGATGGATATAATGTCCCTGTCATTGAAAAAGTAAAAGAGCATGGTTTATATGCCATTGGTTATGTTTCTGACCAA
TCCCATCTAGGAAAATCAGCAGTATTAACAAGTACGATTCAACATGTTGACCATTTGTATGAAATAGTAGCAGAACAATT
TCATAATGGAGAACTTCAGTCTGGAAACCTTTCTTTTGACTTTCAAGAAGATGTCATTTCATTAGGTGCGTATAGTCCAG
AATTATCTCCAACCTTTATTCAACAATTAAATACAGCAGTAAAAAAATATAAAGAAACAGGTAATTTACCGACAGAACCA
TCATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.716

97.508

0.514