Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG282_RS02520 Genome accession   NZ_CP085020
Coordinates   450658..451614 (+) Length   318 a.a.
NCBI ID   WP_251162951.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445658..456614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS02500 (LG282_02495) - 446256..447359 (+) 1104 WP_251162955.1 dipeptide epimerase -
  LG282_RS02505 (LG282_02500) - 447349..448278 (+) 930 WP_404293374.1 NlpC/P60 family protein -
  LG282_RS02510 (LG282_02505) - 448268..449284 (+) 1017 WP_251162953.1 ABC transporter ATP-binding protein -
  LG282_RS02515 (LG282_02510) - 449281..450063 (+) 783 WP_251162952.1 serine hydrolase -
  LG282_RS02520 (LG282_02515) ceuB 450658..451614 (+) 957 WP_251162951.1 ABC transporter permease Machinery gene
  LG282_RS02525 (LG282_02520) - 451601..452557 (+) 957 WP_224938162.1 iron chelate uptake ABC transporter family permease subunit -
  LG282_RS02530 (LG282_02525) - 452554..453324 (+) 771 WP_224938161.1 ABC transporter ATP-binding protein -
  LG282_RS02535 (LG282_02530) - 453673..454695 (+) 1023 WP_251162950.1 siderophore ABC transporter substrate-binding protein -
  LG282_RS02540 (LG282_02535) - 455266..455844 (-) 579 WP_095370861.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35165.46 Da        Isoelectric Point: 9.1602

>NTDB_id=614593 LG282_RS02520 WP_251162951.1 450658..451614(+) (ceuB) [Cytobacillus kochii strain SLM-180]
MRIWMLICAAIVLSFISLFIGAIDIKPMDLLDWESDETQIFLISRVPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGIMISMLFFTNVTYTQQVLFSFAFALVGTMVFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFFAYEADIL
QNISSWLMGSFTLVISGRYELLYVSIPVFILSYLYANKFTVAGMGEEFAKNLGLSYKWVLNIGLILVAIIATTVVLTVGV
IPFLGLIVPNIVSLYMGDNLRKTIPHTALLGVVFLLICDIIGRIVIHPYEIPVNVTVAVIGSVIFLIMLFRGRAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=614593 LG282_RS02520 WP_251162951.1 450658..451614(+) (ceuB) [Cytobacillus kochii strain SLM-180]
ATGAGAATATGGATGTTAATCTGTGCAGCTATAGTCCTGTCATTTATATCACTATTTATCGGTGCGATTGATATTAAACC
AATGGATTTGCTAGATTGGGAGTCTGATGAAACACAAATTTTCCTGATTAGTCGTGTACCTAGATTAATAGCGATTATTT
TAGCTGGTGCAGGAATGAGTATTGCTGGTTTGATTATGCAAAGTTTGAGCAGGAATAAATTTGTTTCTCCGACAACCGCG
GGAACGTTAGATGCTGCTAAGCTAGGTATTATGATTTCCATGCTATTTTTTACGAACGTAACGTATACCCAGCAAGTTCT
TTTTAGTTTTGCCTTTGCGCTTGTCGGTACGATGGTATTTATGCAAATACTTGATCGTATCAAATTTAAAGATGTTATAT
TTGTTCCTCTTATTGGAATAATGTACGGGAATATTTTGTCTTCTATTACCACTTTTTTTGCGTATGAAGCTGATATCCTG
CAAAATATATCTTCATGGTTAATGGGGAGTTTTACTTTAGTAATCTCGGGCCGATATGAACTTTTATATGTAAGTATCCC
AGTTTTCATTTTGTCTTATTTATATGCTAATAAATTTACCGTTGCAGGTATGGGAGAAGAATTTGCGAAAAATTTAGGAT
TGAGCTATAAGTGGGTTTTAAATATTGGTCTCATCCTTGTTGCTATCATTGCTACGACTGTTGTACTAACTGTCGGTGTC
ATTCCGTTCTTAGGCTTAATTGTACCTAATATTGTGTCTCTGTATATGGGAGATAATCTCCGAAAAACGATTCCACATAC
GGCTCTTTTAGGCGTTGTGTTCTTATTAATCTGTGATATTATTGGGCGCATTGTGATCCACCCTTATGAGATACCGGTGA
ACGTAACAGTTGCGGTAATCGGTAGTGTCATCTTCTTAATTATGTTGTTTAGGGGGAGAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.371

0.531