Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG320_RS11380 Genome accession   NZ_CP085018
Coordinates   2137090..2138892 (-) Length   600 a.a.
NCBI ID   WP_119923239.1    Uniprot ID   A0A419DPI4
Organism   Exiguobacterium undae strain SLM-182     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132090..2143892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG320_RS11355 (LG320_11340) - 2133003..2133881 (-) 879 WP_404274505.1 RluA family pseudouridine synthase -
  LG320_RS11360 (LG320_11345) - 2133896..2134699 (-) 804 WP_026832483.1 NAD kinase -
  LG320_RS11365 (LG320_11350) - 2134710..2135360 (-) 651 WP_026832482.1 GTP pyrophosphokinase family protein -
  LG320_RS11370 (LG320_11355) - 2135466..2136041 (+) 576 WP_026832481.1 CYTH domain-containing protein -
  LG320_RS11375 (LG320_11360) - 2136133..2136924 (+) 792 WP_026832480.1 DsbA family protein -
  LG320_RS11380 (LG320_11365) pepF 2137090..2138892 (-) 1803 WP_119923239.1 oligoendopeptidase F Regulator
  LG320_RS11385 (LG320_11370) - 2138898..2139965 (-) 1068 WP_404274507.1 competence protein CoiA family protein -
  LG320_RS11390 (LG320_11375) cls 2139999..2141510 (-) 1512 WP_026832477.1 cardiolipin synthase -
  LG320_RS11395 (LG320_11380) - 2141569..2142291 (+) 723 WP_404274508.1 SDR family NAD(P)-dependent oxidoreductase -
  LG320_RS11400 (LG320_11385) mecA 2142371..2142997 (-) 627 WP_026832475.1 adaptor protein MecA -
  LG320_RS11405 (LG320_11390) spxA 2143167..2143565 (-) 399 WP_012370920.1 transcriptional regulator SpxA -
  LG320_RS11410 (LG320_11395) - 2143740..2143877 (-) 138 WP_012370921.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68703.21 Da        Isoelectric Point: 4.6687

>NTDB_id=614570 LG320_RS11380 WP_119923239.1 2137090..2138892(-) (pepF) [Exiguobacterium undae strain SLM-182]
MAEVLTRNDVNVEETWNLESIYETNEAWEEEFESVKAMLPLLVEYKGRLAQTDAILFEGLQLRDEVSRRLHKLYTYAHMR
YDENTADSFYQAMNDRARTLASQIGATLAFMTPELLEVPEETIASYLEKNPDLALYRHAFDELNREREHVLSEAEEAILA
KAGEVLGQSGTTFGMLNNADMKFPKIKGEDGEETELTHGRFITFMESKDRSVREAAFKAMYGTYSQYTNTLASTLAGSIK
KDNFYAEVRKFKTARESALHGNTIPEQVYDGLIEAVHEHLPLLHRYVALRKRILGVEELHVYDMYTPLVSEVEMKVTYEE
AKQLMIDGLAPLGAEYKHILEDGLAKRWVDVRETRGKRSGAYSSGAYDTQPFILMNWQDNVNNLFTLAHEFGHSVHSYYT
RQNQPYAYGDYSIFVAEVASTTNEALLNDYLLKRVTDKNEKLYLLNNQLETFRGTLFRQTMFAEFEHQIHEAARLGQALT
PEFLTKTYYALNETYFGDGIVLDEEIGLEWARIPHFYYNYYVYQYATGISAAAALTSQILEEGQPAVDRYINNFLKAGSS
DYPIEVLKAAGVDMTTKAPVEAALRQFERVLNEFEALLGE

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=614570 LG320_RS11380 WP_119923239.1 2137090..2138892(-) (pepF) [Exiguobacterium undae strain SLM-182]
ATGGCAGAAGTATTAACTCGGAATGATGTGAATGTTGAAGAAACATGGAATTTAGAGTCCATTTACGAAACGAACGAGGC
ATGGGAAGAGGAATTTGAATCGGTCAAAGCGATGCTTCCGTTACTTGTCGAGTACAAAGGGCGTCTGGCGCAGACGGATG
CGATTCTATTTGAAGGATTACAGTTACGTGATGAGGTTTCAAGACGTCTGCATAAACTCTATACATACGCCCATATGCGT
TACGATGAGAATACGGCAGACAGTTTCTATCAGGCGATGAATGACCGTGCCCGGACACTCGCGTCCCAAATTGGTGCCAC
GTTAGCATTCATGACGCCGGAGTTGTTGGAAGTACCGGAAGAAACAATCGCTTCCTACTTAGAGAAAAATCCGGATCTTG
CATTATACCGTCATGCCTTCGACGAGTTGAACCGTGAGCGTGAACACGTCTTGTCAGAAGCGGAAGAGGCGATTTTAGCG
AAAGCCGGTGAAGTTCTTGGTCAATCCGGAACGACGTTTGGCATGCTGAATAATGCGGACATGAAATTCCCGAAAATTAA
AGGGGAAGATGGGGAAGAGACGGAGTTGACACACGGACGCTTTATCACGTTCATGGAGTCGAAGGACCGCTCTGTTCGTG
AAGCCGCCTTTAAGGCCATGTACGGGACATACAGCCAGTACACAAACACGTTAGCCTCTACCTTAGCAGGATCGATCAAA
AAGGATAACTTTTATGCAGAAGTCCGTAAGTTCAAAACGGCGCGCGAATCGGCTTTACATGGAAATACGATTCCGGAACA
AGTCTATGACGGCCTGATCGAAGCAGTTCATGAACATTTACCATTGTTACATCGTTATGTGGCGTTACGGAAACGGATCT
TAGGTGTCGAAGAGCTGCATGTCTACGATATGTATACACCACTTGTGAGTGAAGTGGAAATGAAAGTCACGTACGAGGAA
GCCAAACAATTGATGATCGATGGTCTTGCTCCACTCGGTGCGGAATATAAACATATCTTAGAAGACGGTTTGGCAAAACG
TTGGGTGGATGTCCGGGAAACACGTGGTAAGCGGAGTGGTGCCTATTCTTCAGGCGCGTACGATACGCAACCGTTCATCT
TGATGAACTGGCAAGACAACGTCAATAACCTGTTCACGTTAGCACACGAGTTTGGGCATTCCGTCCACAGTTACTATACA
CGTCAAAATCAGCCATATGCGTACGGTGACTACTCGATTTTTGTTGCGGAAGTCGCGTCGACAACAAACGAGGCACTCTT
AAATGATTATCTGTTAAAACGGGTGACGGATAAAAATGAAAAACTGTATCTGTTGAACAATCAGTTGGAAACATTCCGTG
GAACGTTGTTCCGACAAACGATGTTTGCTGAATTTGAACATCAAATTCATGAAGCAGCACGACTCGGTCAAGCGTTGACA
CCTGAGTTTTTAACAAAAACGTATTATGCACTCAATGAGACGTATTTCGGAGACGGGATCGTTCTCGATGAAGAAATCGG
ATTAGAGTGGGCACGGATTCCACACTTCTATTACAACTATTATGTGTATCAGTATGCGACAGGTATTTCTGCGGCGGCAG
CACTGACTTCACAAATTTTAGAAGAAGGACAACCCGCTGTCGACCGTTACATCAACAATTTCCTAAAGGCCGGATCGAGT
GACTATCCGATTGAAGTATTAAAAGCAGCGGGAGTCGATATGACGACAAAAGCGCCGGTTGAAGCGGCACTGCGTCAATT
CGAACGTGTATTGAATGAATTCGAGGCGTTACTTGGAGAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-585)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A419DPI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.49

99.333

0.482