Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG320_RS05020 Genome accession   NZ_CP085018
Coordinates   981098..982804 (+) Length   568 a.a.
NCBI ID   WP_214721145.1    Uniprot ID   -
Organism   Exiguobacterium undae strain SLM-182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 976098..987804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG320_RS04995 (LG320_04985) xseB 976587..976808 (+) 222 WP_035387654.1 exodeoxyribonuclease VII small subunit -
  LG320_RS05000 (LG320_04990) - 976805..977674 (+) 870 WP_026833557.1 polyprenyl synthetase family protein -
  LG320_RS05005 (LG320_04995) dxs 977796..979682 (+) 1887 WP_026833556.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG320_RS05010 (LG320_05000) - 979689..980495 (+) 807 WP_026833555.1 TlyA family RNA methyltransferase -
  LG320_RS05015 (LG320_05005) ahrC 980636..981085 (+) 450 WP_026833554.1 transcriptional regulator AhrC/ArgR -
  LG320_RS05020 (LG320_05010) recN 981098..982804 (+) 1707 WP_214721145.1 DNA repair protein RecN Machinery gene
  LG320_RS05025 (LG320_05015) spo0A 982808..983521 (+) 714 WP_081776043.1 sporulation transcription factor Spo0A -
  LG320_RS05030 (LG320_05020) - 984259..984519 (-) 261 WP_081776042.1 DUF2627 family protein -
  LG320_RS05035 (LG320_05025) - 984641..986296 (+) 1656 WP_026833550.1 sigma-54-dependent Fis family transcriptional regulator -
  LG320_RS05040 (LG320_05030) yqiS 986440..987360 (+) 921 WP_255415497.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64208.78 Da        Isoelectric Point: 4.6090

>NTDB_id=614564 LG320_RS05020 WP_214721145.1 981098..982804(+) (recN) [Exiguobacterium undae strain SLM-182]
MLAELSIKQFAIIDQLQIDFKKGMTVLTGETGAGKSIVLDAIGLLIGGRGSAEFVRYGEDKAELEGLFMIEDGHMAYTLA
EEYGIDMEDGMIILRRDLFASGKSVCRVNHKLVTLTILREFGRVLVDLHGQHEHQHLMESTYHQTILDDFGQETIAPILE
RYQARFEQYEEKRDALQALAQSEQELAQRIDLLSFQTEEIDSAKLRKGEEEDLLSERNRLANFEKLHASLSAAYDALHDE
RRGIDSVGDAMRELQQASSIDEEFSGQSDTLANAFYALEEVGYAIRDQLETLEFDSNRLDEIELRLSVFQQLKRKYGATI
EEVIAYGKKISVELDTMTNRDERIEKLKTEVEQLESELFEIGGELSQARRQAALLLGEAIHLELRQLYMEKARFEIRFLQ
DGKTPVLRRNGIDFVEFYIMTNAGEPFKSLGKVASGGELSRIMLGLKSIFSRSVGVASIIFDEVDTGVSGRVAQAMAEKI
YRLSIDSQVLCITHLPQVASIADQHLYIRKIEETDRTTTQVNVLTDSERGNELGRMISGTHMTDLTLRHAEELMEQAMNM
KESLKNGV

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=614564 LG320_RS05020 WP_214721145.1 981098..982804(+) (recN) [Exiguobacterium undae strain SLM-182]
ATGTTAGCCGAATTATCGATTAAACAATTTGCAATCATTGACCAACTGCAAATCGACTTTAAAAAAGGGATGACGGTCTT
GACCGGAGAAACCGGAGCCGGGAAATCAATTGTCCTTGACGCAATCGGGTTATTGATTGGTGGACGCGGTTCTGCCGAGT
TCGTCCGGTACGGTGAAGACAAAGCGGAACTCGAAGGTCTGTTCATGATTGAAGACGGTCATATGGCGTATACGTTGGCA
GAGGAATACGGCATTGACATGGAAGACGGCATGATCATCTTGCGACGGGACTTGTTTGCTTCCGGTAAAAGTGTCTGCCG
GGTGAATCATAAACTCGTGACATTAACAATCTTACGTGAATTCGGGCGGGTTCTGGTCGATCTACACGGTCAGCATGAGC
ATCAGCATTTGATGGAGAGTACGTATCATCAGACGATTCTCGATGATTTTGGTCAAGAGACGATCGCACCGATTCTCGAG
CGTTATCAAGCACGGTTTGAACAGTACGAAGAAAAGCGGGACGCGTTGCAGGCATTGGCGCAAAGTGAGCAGGAACTCGC
TCAACGGATTGATCTCTTATCCTTTCAGACGGAAGAAATCGACAGTGCGAAACTTCGAAAAGGGGAAGAAGAAGATCTGT
TGAGCGAACGGAATCGGTTGGCGAACTTCGAGAAGCTGCATGCGTCCTTGAGTGCTGCCTATGACGCGTTGCATGACGAA
CGGCGGGGGATTGACTCAGTCGGGGATGCAATGCGTGAGCTCCAGCAAGCATCCAGCATCGATGAAGAGTTCTCCGGACA
AAGTGATACGCTGGCCAATGCCTTTTACGCGTTGGAGGAAGTCGGCTATGCGATTCGTGACCAACTCGAGACACTGGAGT
TCGATTCGAACCGGCTGGACGAGATTGAACTGCGGTTATCCGTTTTCCAGCAGTTGAAACGAAAATACGGGGCGACGATT
GAAGAAGTCATCGCCTATGGCAAAAAAATCAGTGTCGAACTGGACACGATGACGAACCGGGACGAACGGATTGAGAAACT
GAAGACGGAAGTCGAACAACTGGAGTCTGAGCTGTTTGAGATCGGCGGCGAACTGTCGCAAGCCCGTCGCCAGGCAGCGC
TCCTTTTGGGAGAGGCGATCCATCTCGAATTACGTCAATTGTACATGGAGAAGGCACGATTTGAGATTCGATTCCTGCAA
GACGGAAAAACACCGGTCTTACGGAGAAACGGAATTGATTTCGTTGAGTTCTATATCATGACCAATGCGGGAGAGCCGTT
CAAGTCACTTGGGAAAGTTGCATCCGGCGGAGAATTATCACGGATCATGCTTGGTTTGAAATCAATTTTCTCGCGTTCGG
TCGGTGTGGCGTCCATCATCTTTGATGAAGTCGACACAGGGGTATCCGGACGGGTCGCGCAAGCGATGGCAGAAAAAATC
TATCGTCTGTCGATCGACAGTCAGGTACTGTGTATCACGCATTTGCCACAAGTGGCTTCGATTGCGGACCAACATCTGTA
TATCCGTAAAATCGAAGAGACAGACCGGACGACGACGCAAGTGAACGTCCTGACGGATTCGGAACGCGGCAATGAGCTTG
GACGCATGATTTCCGGAACACATATGACGGATTTGACGTTGCGTCATGCCGAGGAATTGATGGAACAGGCAATGAACATG
AAGGAATCGCTTAAAAATGGGGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.054

100

0.535