Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG320_RS00540 Genome accession   NZ_CP085018
Coordinates   97109..98485 (+) Length   458 a.a.
NCBI ID   WP_026834320.1    Uniprot ID   -
Organism   Exiguobacterium undae strain SLM-182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 92109..103485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG320_RS00520 (LG320_00520) - 92614..93069 (+) 456 WP_026834324.1 CtsR family transcriptional regulator -
  LG320_RS00525 (LG320_00525) - 93086..93514 (+) 429 WP_026834323.1 hypothetical protein -
  LG320_RS00530 (LG320_00530) - 93507..94580 (+) 1074 WP_026834322.1 ATP--guanido phosphotransferase -
  LG320_RS00535 (LG320_00535) clpC 94580..97033 (+) 2454 WP_026834321.1 ATP-dependent protease ATP-binding subunit ClpC -
  LG320_RS00540 (LG320_00540) radA 97109..98485 (+) 1377 WP_026834320.1 DNA repair protein RadA Machinery gene
  LG320_RS00545 (LG320_00545) - 98617..99708 (+) 1092 WP_119924080.1 PIN/TRAM domain-containing protein -
  LG320_RS00550 (LG320_00550) ispD 99767..100450 (+) 684 WP_119924079.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LG320_RS00555 (LG320_00555) ispF 100453..100935 (+) 483 WP_026834317.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LG320_RS00560 (LG320_00560) gltX 100981..102426 (+) 1446 WP_404275414.1 glutamate--tRNA ligase -
  LG320_RS00565 (LG320_00565) cysE 102689..103372 (+) 684 WP_026834315.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49998.58 Da        Isoelectric Point: 6.6520

>NTDB_id=614560 LG320_RS00540 WP_026834320.1 97109..98485(+) (radA) [Exiguobacterium undae strain SLM-182]
MAKLKTKFVCQSCGTESPKWMGRCSGCGEWNTMVEEVVEEKKARRGSAFVHTTTKQLKPERLSNIVSQEESRVFTGSSEF
DRVLGGGIVPGSMVLVGGDPGIGKSTILLQTSARLAQRGEKVLYISGEESLKQTKLRAERLGLPTQDLFVLSETDMNMIE
RVVDEENPGFLIIDSIQTVYIDEIQSAPGSVTQVRECTAMLMKIAKSRGIAIFIVGHVTKQGSIAGPRLLEHMVDAVLYF
EGERHHTFRILRAVKNRFGSTNEIGIFEMRESGLEEVLNPSEIFLEERTSGVSGSTIVASMEGTRTVLVELQALISPTSF
GNPRRMATGIDQNKVALLMAVLEKRSGLLLQTQDAYLKAAGGVKLDEPAIDLAICVAVASSFRDKPTRPTDVVIGEVGLT
GEVRRVSRIEQRVAEAAKLGFTRAIIPKNNLGGWTYPPGITVIGVESVDEALRETIPF

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=614560 LG320_RS00540 WP_026834320.1 97109..98485(+) (radA) [Exiguobacterium undae strain SLM-182]
TTGGCTAAACTGAAGACGAAATTTGTCTGCCAAAGTTGTGGAACGGAATCTCCGAAATGGATGGGTCGTTGTTCGGGCTG
TGGCGAATGGAACACGATGGTCGAAGAAGTCGTAGAAGAGAAAAAAGCCCGTCGTGGTTCTGCTTTTGTGCATACGACGA
CAAAGCAATTAAAACCGGAACGCTTGTCGAATATCGTTTCGCAGGAAGAAAGCCGCGTCTTTACCGGAAGCAGTGAGTTT
GACCGTGTGCTCGGTGGGGGAATCGTTCCCGGATCGATGGTACTGGTCGGAGGAGATCCCGGGATCGGGAAATCGACGAT
TTTACTCCAGACAAGTGCCCGTCTCGCACAACGGGGCGAAAAGGTGCTCTATATTTCAGGAGAAGAATCACTGAAACAAA
CGAAATTACGAGCTGAACGACTGGGATTACCGACACAGGATTTGTTCGTGTTAAGTGAAACCGATATGAACATGATCGAA
CGGGTCGTCGATGAAGAAAACCCGGGCTTTTTGATCATTGACTCGATTCAGACGGTGTATATCGATGAGATCCAGTCGGC
GCCGGGCAGCGTTACGCAAGTCCGGGAATGTACAGCGATGCTGATGAAAATCGCGAAGAGCCGCGGAATCGCCATCTTTA
TCGTCGGTCATGTGACGAAACAAGGTTCGATTGCGGGTCCCCGTCTGCTTGAGCACATGGTTGATGCCGTATTGTATTTT
GAAGGAGAACGTCATCATACGTTCCGGATTTTACGTGCCGTCAAAAACCGGTTTGGTTCAACCAATGAGATCGGGATTTT
TGAAATGCGGGAATCGGGACTCGAAGAAGTCTTGAATCCGTCGGAGATTTTCCTCGAAGAACGGACGTCCGGTGTTTCCG
GATCGACAATCGTCGCCTCGATGGAAGGGACGCGAACAGTCCTCGTTGAGTTACAGGCGTTGATTTCACCGACCTCATTT
GGTAATCCACGCCGTATGGCGACAGGCATTGATCAAAATAAAGTGGCTTTATTGATGGCAGTTCTGGAAAAACGGTCCGG
CTTGTTGCTTCAAACCCAGGATGCGTATCTCAAGGCAGCAGGTGGTGTCAAATTGGATGAACCGGCAATCGATTTAGCGA
TTTGTGTTGCCGTCGCCTCGAGTTTCCGTGATAAGCCAACACGTCCGACTGACGTCGTCATTGGCGAAGTCGGTTTGACA
GGAGAAGTCAGACGGGTATCCCGGATTGAACAACGTGTCGCCGAAGCAGCCAAGCTCGGTTTCACGCGGGCGATCATTCC
GAAAAACAACCTCGGGGGTTGGACCTATCCTCCCGGCATCACGGTGATCGGTGTTGAAAGTGTCGATGAAGCCTTACGTG
AGACAATTCCGTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.807

99.563

0.725
  radA Streptococcus pneumoniae Rx1

62.281

99.563

0.62
  radA Streptococcus pneumoniae D39

62.281

99.563

0.62
  radA Streptococcus pneumoniae R6

62.281

99.563

0.62
  radA Streptococcus pneumoniae TIGR4

62.281

99.563

0.62
  radA Streptococcus mitis NCTC 12261

62.281

99.563

0.62
  radA Streptococcus mitis SK321

62.281

99.563

0.62