Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG289_RS11620 Genome accession   NZ_CP085014
Coordinates   2235946..2237754 (-) Length   602 a.a.
NCBI ID   WP_404334051.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2230946..2242754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS11590 (LG289_11595) - 2231003..2231878 (-) 876 WP_404334043.1 RluA family pseudouridine synthase -
  LG289_RS11595 (LG289_11600) - 2231883..2232692 (-) 810 WP_101190661.1 NAD kinase -
  LG289_RS11600 (LG289_11605) - 2232689..2233366 (-) 678 WP_404334045.1 GTP pyrophosphokinase family protein -
  LG289_RS11605 (LG289_11610) - 2233639..2234208 (+) 570 WP_404334047.1 CYTH domain-containing protein -
  LG289_RS11610 (LG289_11615) - 2234305..2234703 (+) 399 WP_121297857.1 globin -
  LG289_RS11615 (LG289_11620) - 2234700..2235497 (+) 798 WP_404334049.1 ClpXP adapter SpxH family protein -
  LG289_RS11620 (LG289_11625) pepF 2235946..2237754 (-) 1809 WP_404334051.1 oligoendopeptidase F Regulator
  LG289_RS11625 (LG289_11630) - 2237807..2238895 (-) 1089 WP_404334053.1 competence protein CoiA -
  LG289_RS11630 (LG289_11635) mecA 2239026..2239682 (-) 657 WP_101805136.1 adaptor protein MecA -
  LG289_RS11635 (LG289_11640) spxA 2239983..2240378 (-) 396 WP_008429739.1 transcriptional regulator SpxA -
  LG289_RS11640 (LG289_11645) - 2240783..2241982 (-) 1200 WP_404334055.1 putative glycoside hydrolase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68941.13 Da        Isoelectric Point: 4.6358

>NTDB_id=614540 LG289_RS11620 WP_404334051.1 2235946..2237754(-) (pepF) [Planococcus rifietoensis strain SLM-623]
MTEKLMTRDQVSAELTWRLEDIFATDAQWEEEFKAVSALAEKAGQYEGTLSAGADALYEALNYKDELSERLRKLYAYAHM
RYDQDTTNSTYQAMDSRIKSLFAKTAAGLSFMTPEILSLDEAELNRYVDEHDGLKLYRHALEELNTMRPHVLKAEQEALL
AQLSEVVGASSETFGMLNNADLEFPEIENENGEKVQITHGNYIRFMESKDRRVREDAFKAVYATYGKFRNTFASTLSGNV
KRDNVHARIRNYSSAREAALSDDHIPEAVYDQLVETVNNNLHLLQRYVALRKEVLGLDQVHMYDMYTPLVKEVKMEIPYD
KATGMMLEGLNALGEEYVGIVKNGIDNRWVDVKENKGKRSGAYSSGAYGTNPYILMNWQDNVDNLFTLAHEFGHSVHSHY
TRESQPFVYGDYSIFVAEVASTTNEALLNEHLVNTTEDEQERIYLLNHWLDGFRGTVFRQTMFAEFEHTIHQMDQNGEAL
TADRLTEVYYELNKKYFGEDMAVDEEIGLEWARIPHFYYNYYVFQYATGFSAATALSKKILEEGQPAVERYINEFLKAGS
SDYPIEVLKKAGVDMTSSEPVEEACKVFGQKLEELEGLLLKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=614540 LG289_RS11620 WP_404334051.1 2235946..2237754(-) (pepF) [Planococcus rifietoensis strain SLM-623]
ATGACGGAAAAATTAATGACAAGAGATCAAGTGTCTGCAGAACTGACATGGCGCTTGGAGGATATTTTTGCTACAGATGC
ACAATGGGAAGAAGAATTCAAAGCCGTCTCGGCGCTGGCTGAGAAAGCAGGACAATACGAAGGTACTTTATCAGCCGGGG
CGGATGCCCTGTACGAGGCGCTAAACTATAAAGATGAATTATCGGAGCGCCTGCGCAAGCTCTACGCATACGCACATATG
CGTTATGACCAGGATACGACAAATTCAACATACCAGGCGATGGACAGCCGCATCAAATCGCTTTTTGCCAAGACGGCAGC
AGGGTTGTCTTTCATGACGCCTGAGATCCTGTCTTTGGATGAAGCAGAGCTCAACCGCTATGTAGACGAACATGACGGCC
TTAAGCTTTATCGACACGCGCTCGAAGAACTTAATACAATGCGTCCGCACGTACTGAAAGCGGAGCAGGAAGCGCTTCTT
GCGCAATTGTCGGAAGTGGTCGGAGCGTCTTCTGAAACATTCGGCATGCTCAATAATGCCGATTTGGAGTTTCCGGAAAT
CGAAAATGAAAACGGCGAAAAAGTGCAGATCACACATGGCAATTACATCCGTTTCATGGAAAGCAAAGATCGCCGCGTGC
GCGAAGACGCATTTAAAGCCGTTTATGCGACGTATGGCAAATTCCGCAATACCTTTGCTTCCACTTTATCCGGAAATGTT
AAACGGGATAACGTTCACGCGAGAATCCGTAACTATTCATCGGCTCGCGAAGCGGCACTGTCGGATGACCATATTCCGGA
AGCTGTATACGATCAATTGGTCGAAACCGTCAACAACAACCTTCATCTATTGCAGCGCTACGTAGCGCTCCGCAAGGAAG
TATTGGGACTTGACCAAGTCCATATGTATGACATGTACACACCGCTCGTCAAGGAAGTCAAGATGGAGATCCCTTATGAC
AAGGCGACAGGCATGATGCTCGAAGGCTTGAATGCGCTCGGTGAAGAATATGTCGGGATCGTCAAAAACGGCATCGACAA
CCGCTGGGTTGACGTGAAAGAAAACAAAGGTAAACGAAGCGGCGCTTATTCTTCCGGCGCTTATGGCACAAATCCTTATA
TCCTGATGAACTGGCAGGACAATGTAGACAACTTGTTCACGTTGGCGCATGAATTCGGCCATAGTGTCCATAGCCATTAC
ACAAGAGAAAGCCAACCGTTCGTCTACGGCGATTATTCCATCTTTGTGGCAGAAGTCGCATCGACGACGAATGAAGCCTT
GCTGAACGAACACCTGGTCAATACAACAGAAGACGAGCAGGAACGCATCTATTTGCTCAATCATTGGCTTGATGGTTTCC
GTGGCACGGTTTTCCGCCAGACAATGTTTGCTGAATTCGAGCACACAATCCACCAGATGGACCAGAATGGTGAAGCTTTG
ACGGCTGACCGGTTGACGGAAGTGTATTACGAGCTGAACAAAAAGTATTTTGGTGAAGACATGGCAGTGGATGAAGAGAT
CGGCCTCGAGTGGGCACGCATTCCGCATTTCTACTATAATTATTATGTATTCCAGTATGCGACAGGATTCAGCGCAGCTA
CTGCATTAAGCAAAAAGATCCTTGAAGAAGGGCAGCCAGCTGTAGAGCGTTATATTAACGAATTCCTGAAAGCGGGCAGC
TCTGATTACCCGATTGAAGTATTGAAAAAAGCCGGTGTGGACATGACCTCATCCGAGCCGGTCGAAGAGGCGTGCAAAGT
CTTCGGCCAAAAGCTTGAAGAACTCGAAGGATTGCTATTGAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-184)

Peptidase family M3 (Peptidase_M3)

(205-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.99

98.671

0.483