Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SCRE_RS02425 Genome accession   NC_022236
Coordinates   473013..473726 (-) Length   237 a.a.
NCBI ID   WP_006267488.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 468013..478726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS02410 (SCRE_0479) - 468487..469611 (+) 1125 WP_006267252.1 AI-2E family transporter -
  SCRE_RS02415 (SCRE_0480) - 469858..471504 (+) 1647 WP_020997653.1 phosphoenolpyruvate carboxykinase (ATP) -
  SCRE_RS02420 (SCRE_0481) - 471618..472958 (+) 1341 WP_006267599.1 hemolysin family protein -
  SCRE_RS02425 (SCRE_0482) treR 473013..473726 (-) 714 WP_006267488.1 trehalose operon repressor Regulator
  SCRE_RS10895 - 473901..474167 (+) 267 Protein_462 PTS transporter subunit EIIB -
  SCRE_RS02430 (SCRE_0483) - 474428..475912 (+) 1485 WP_407829554.1 glucose PTS transporter subunit IIA -
  SCRE_RS02435 (SCRE_0484) treC 476093..477724 (+) 1632 WP_020997654.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27775.86 Da        Isoelectric Point: 9.4377

>NTDB_id=61454 SCRE_RS02425 WP_006267488.1 473013..473726(-) (treR) [Streptococcus constellatus subsp. pharyngis C232]
MKKYEQIFKFIEQDILNEKYQVNDYLPSEHELVQTYKVSRDTIRKSLDLLQKAGLIQKLKGQGSKVTKQEQIDFPVSNLT
SYQELVQQHGINSKTNVIQLEKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKSLVPSMTREIAEQSIY
AYLEGKLGLHIAYAQKEITIDLATNRDKILMDIENDQHVVSVKSKVYLTDGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=61454 SCRE_RS02425 WP_006267488.1 473013..473726(-) (treR) [Streptococcus constellatus subsp. pharyngis C232]
ATGAAGAAATATGAACAAATTTTTAAATTCATAGAACAAGATATTCTAAATGAAAAATATCAAGTTAATGATTATCTCCC
TAGCGAGCATGAACTCGTCCAAACCTACAAAGTCAGCCGTGATACCATTCGCAAGTCACTTGATTTACTTCAAAAAGCTG
GTCTTATCCAAAAACTGAAAGGGCAGGGCTCTAAAGTTACTAAACAAGAACAGATTGACTTTCCTGTCTCCAATCTGACT
AGTTACCAAGAACTCGTGCAACAGCATGGGATAAATTCTAAAACAAATGTCATTCAGTTAGAAAAAATCACGGTTGATAA
AAAGTTATCCAATCTCACAGGCTTTCCTGAATACCGTCTGGTATGGCGAATTGTCCGCCAGAGAGTAGTCGATGACGTCG
CTTCCGTCTTAGATATTGATTACCTTGATAAGAGCCTTGTCCCTTCCATGACTCGAGAAATAGCAGAACAATCGATTTAT
GCTTATCTAGAAGGAAAACTAGGGCTGCACATTGCTTATGCCCAAAAAGAAATCACAATTGATCTAGCTACAAACCGCGA
TAAAATTTTGATGGACATTGAAAATGATCAACACGTCGTTTCTGTTAAATCCAAAGTCTATCTTACAGATGGACAGCAAT
TCCAATTCACAGATAGCCGCCATAAACTGGAAAAATTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(90-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

65.254

99.578

0.65

Multiple sequence alignment