Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG289_RS08470 Genome accession   NZ_CP085014
Coordinates   1625403..1627100 (+) Length   565 a.a.
NCBI ID   WP_404337596.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1620403..1632100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS08445 (LG289_08440) xseB 1620799..1621035 (+) 237 WP_058380874.1 exodeoxyribonuclease VII small subunit -
  LG289_RS08450 (LG289_08445) - 1621032..1621910 (+) 879 WP_404337590.1 polyprenyl synthetase family protein -
  LG289_RS08455 (LG289_08450) dxs 1622005..1623915 (+) 1911 WP_404337592.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG289_RS08460 (LG289_08455) - 1623912..1624757 (+) 846 WP_404337594.1 TlyA family RNA methyltransferase -
  LG289_RS08465 (LG289_08460) ahrC 1624935..1625384 (+) 450 WP_058380870.1 transcriptional regulator AhrC/ArgR -
  LG289_RS08470 (LG289_08465) recN 1625403..1627100 (+) 1698 WP_404337596.1 DNA repair protein RecN Machinery gene
  LG289_RS08475 (LG289_08470) spo0A 1627134..1627883 (+) 750 WP_404337598.1 sporulation transcription factor Spo0A -
  LG289_RS08480 (LG289_08475) - 1628088..1628819 (+) 732 WP_101190262.1 glycerophosphodiester phosphodiesterase family protein -
  LG289_RS08485 (LG289_08480) - 1628888..1629124 (-) 237 WP_101190263.1 DUF2627 domain-containing protein -
  LG289_RS08490 (LG289_08485) - 1629253..1631295 (+) 2043 WP_404337601.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63757.86 Da        Isoelectric Point: 5.9422

>NTDB_id=614533 LG289_RS08470 WP_404337596.1 1625403..1627100(+) (recN) [Planococcus rifietoensis strain SLM-623]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIESEKHPVHKK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
EGYSHTFDKYTKLKREFASYNENEQQIAQRIDLLTFQLREIEEAQLVPGEEETLLEERKRLQNFTKIFESISQAHEAIQG
ESKGLDWVGNAMSELEHAAAVDEQFKEASESVTGAFYQLQDTSTEIKRILDQLEFDPERLNEIEQRLALLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAAAKLSKAIMEQLKELHMGKASFSVQFN
LLPKGKFDRFGQDSIAFHISTNVGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTSVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=614533 LG289_RS08470 WP_404337596.1 1625403..1627100(+) (recN) [Planococcus rifietoensis strain SLM-623]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATTATCGATACATTATCGGTCAGTTTTACAGAAGGCATGACAGTTCT
GACAGGGGAAACCGGTGCCGGGAAATCGATTATCATCGATGCCGTGCACTTATTAGCCGGAGGGCGAGGAAGCCAGGAAT
TCATTCGCCACGGGGCCCAAAAAGCTGAGATCGAAGGCTTGTTCCATATCGAAAGCGAAAAGCATCCGGTCCATAAAAAA
CTGGAGGATTTCGGGATCCAAGCAAGTGACGGGGATGTCTTATTGCGTCGCGAGTTGAATGGCAAAGGCAAAAACGTCTG
CCGCATTAACGGAAAACTTGTCACCATTTCCATTTTACGTGAAGTCGGTGCCGCATTGATCGACATCCACGGCCAGCACG
AGACGCAGGAGTTGATGGATGAAAAGCAGCATCTTCATCTATTGGATCAATTTGCCGGGAAATTATTGACCAAAGCCAAA
GAAGGCTATAGCCATACATTTGATAAATATACGAAATTGAAACGTGAATTTGCCAGCTATAATGAAAACGAGCAGCAAAT
CGCACAGCGCATCGACTTATTGACATTCCAATTGCGTGAAATCGAAGAAGCCCAGCTCGTGCCGGGGGAAGAAGAAACTT
TGCTGGAAGAACGCAAACGATTGCAGAATTTCACCAAAATCTTCGAATCGATTTCACAAGCCCATGAAGCGATTCAAGGG
GAGTCAAAGGGGCTCGATTGGGTTGGCAATGCGATGAGCGAACTTGAACACGCAGCTGCTGTCGATGAGCAATTCAAAGA
AGCGTCGGAATCGGTTACCGGGGCATTCTATCAGCTCCAGGACACATCGACGGAAATCAAGCGCATACTGGACCAGTTGG
AATTCGACCCGGAACGGCTCAATGAAATCGAACAGCGCCTGGCATTATTGCAATCCTTGAAACGCAAATACGGCGCGTCG
GTCGAGGACATGCTTTTGTATCAGGAAGAGCAAGCAGACGAGCTCGATAAATTGCTCAACCGCGACCAGCGCCTGCGCCT
CGATCAGGAGAAACTAAAGGAATTGACCGAGGATTTGCGCATCGAAGCGGAAGAACTGACGATGCTGAGAAAGCAAGCGG
CAGCCAAATTATCGAAAGCGATCATGGAACAGCTAAAAGAGCTCCATATGGGCAAAGCCTCGTTTTCGGTGCAGTTCAAC
TTGCTGCCAAAAGGCAAATTCGACCGTTTCGGCCAGGACAGCATCGCATTCCATATTTCGACGAATGTCGGGGAACCGTT
GAAGCCGTTGACGAAAGTAGCTTCAGGCGGCGAATTGTCGCGCATGATGCTCGCGCTGAAGACGATTTTTTCCAAGCACC
AAGGCATCACATCGATCATTTTCGATGAAGTCGACACAGGAGTCAGCGGGCGCGTGGCGCAGGCAATTGCCGAGAAAATT
GCCGCCATTGCCCGCCATTCACAAGTGCTGTGCATTTCCCATTTGCCGCAAGTCGCCGCCATGGCAGACCAGCATCTGTT
TATCGAGAAAAAAGTATCGAAAGACCGCACGACAACATCGGTGAAAGAATTGGCAGGGCGCAAGCGCACTGAAGAAATGA
GCCGCATGCTGTCAGGGGCGGAAATCACCGAATTGACCTTGCAGCATGCTGATGAATTGCTGACTTTGGCGAGGGACCGG
AAGCTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.93

100

0.524