Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG289_RS02830 Genome accession   NZ_CP085014
Coordinates   517149..518099 (+) Length   316 a.a.
NCBI ID   WP_058381854.1    Uniprot ID   -
Organism   Planococcus rifietoensis strain SLM-623     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512149..523099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS02815 (LG289_02805) - 513469..514182 (+) 714 WP_404336277.1 VOC family protein -
  LG289_RS02820 (LG289_02810) hflX 514284..515555 (+) 1272 WP_404336279.1 GTPase HflX -
  LG289_RS02825 (LG289_02815) - 515735..516610 (+) 876 WP_404336281.1 DUF6612 family protein -
  LG289_RS02830 (LG289_02820) ceuB 517149..518099 (+) 951 WP_058381854.1 ABC transporter permease Machinery gene
  LG289_RS02835 (LG289_02825) - 518092..519042 (+) 951 WP_101189449.1 iron chelate uptake ABC transporter family permease subunit -
  LG289_RS02840 (LG289_02830) - 519039..519800 (+) 762 WP_404336284.1 ABC transporter ATP-binding protein -
  LG289_RS02845 (LG289_02835) - 519934..520575 (+) 642 WP_404336286.1 phosphatase PAP2 family protein -
  LG289_RS02850 (LG289_02840) - 520674..521957 (-) 1284 WP_101189452.1 ammonium transporter -
  LG289_RS02855 (LG289_02845) - 521970..522311 (-) 342 WP_101189453.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34922.30 Da        Isoelectric Point: 10.1518

>NTDB_id=614522 LG289_RS02830 WP_058381854.1 517149..518099(+) (ceuB) [Planococcus rifietoensis strain SLM-623]
MKKRILIPILILLSFISLFVGVSSISPLDLLDFQSEETQIFLVSRFPRLVAILLAGAGMSMAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMIEKMAVAFLFALAGTFLFMQILNRIKFKDAIFIPLIGLMFGNILSSITTFFAYRADVI
QNMSAWLQGDFSMVMKGSYELLYISVPVFIIAYMYANRFTVAGMGEDFSKNLGLKYRSVVNIGLTLVALITATVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTAMLGAIFLLVCDILGRVLIYPYEITISLMVGVIGSFIFLIMLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=614522 LG289_RS02830 WP_058381854.1 517149..518099(+) (ceuB) [Planococcus rifietoensis strain SLM-623]
ATGAAAAAACGTATTCTAATACCCATATTGATCCTTCTGTCGTTCATCTCCCTGTTTGTTGGAGTCAGCAGCATCAGCCC
GCTGGATCTCCTTGATTTTCAATCAGAAGAAACACAGATTTTCCTCGTCAGCCGCTTTCCGCGGCTTGTCGCGATTTTAC
TGGCTGGGGCTGGCATGAGCATGGCGGGGCTCATCATGCAGCAATTGAGCCGCAATAAATTCGTCTCGCCGACGACTGCC
GGGACGCTTGATGCGACGCGCCTCGGGATTCTCGTTTCGATGTTGCTGTTTGCGAATGCTTCGATGATCGAGAAGATGGC
AGTGGCGTTTTTGTTCGCGCTTGCTGGAACATTTTTGTTCATGCAAATCCTGAACCGTATCAAATTCAAGGACGCCATCT
TCATTCCGCTCATCGGCTTGATGTTCGGCAATATCCTGTCGTCGATCACCACATTTTTTGCCTACCGGGCAGACGTTATC
CAGAACATGTCGGCTTGGCTGCAGGGTGATTTTTCGATGGTCATGAAAGGCAGCTACGAACTTCTTTACATAAGTGTACC
GGTCTTCATCATCGCCTATATGTACGCCAACCGCTTTACCGTTGCAGGCATGGGTGAGGATTTCTCGAAAAACTTAGGGC
TGAAATACCGCAGCGTCGTCAACATCGGTTTGACCTTGGTTGCGCTTATTACAGCGACTGTGGTTTTGACCGTCGGCATG
ATCCCGTTCCTCGGATTGATCATTCCGAATATCGTCTCCATCTTCAAAGGGGACCATCTGCAGAAAACCTTGCCGCATAC
TGCGATGCTCGGTGCCATCTTCCTATTGGTCTGTGACATTCTCGGGCGTGTCTTGATTTATCCGTACGAGATCACAATCA
GCCTGATGGTGGGCGTCATCGGAAGCTTTATCTTCCTGATCATGTTGTTTAGGAGGAAGGCGTATGCGTGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.994

99.051

0.535