Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG289_RS00500 Genome accession   NZ_CP085014
Coordinates   101304..102686 (+) Length   460 a.a.
NCBI ID   WP_058382198.1    Uniprot ID   A0A0U2Q965
Organism   Planococcus rifietoensis strain SLM-623     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96304..107686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG289_RS00475 (LG289_00475) - 96322..96567 (+) 246 WP_101189173.1 hypothetical protein -
  LG289_RS00480 (LG289_00480) - 96707..97192 (+) 486 WP_274624296.1 CtsR family transcriptional regulator -
  LG289_RS00485 (LG289_00485) - 97189..97722 (+) 534 WP_101189175.1 UvrB/UvrC motif-containing protein -
  LG289_RS00490 (LG289_00490) - 97712..98803 (+) 1092 WP_404335735.1 protein arginine kinase -
  LG289_RS00495 (LG289_00495) - 98800..101244 (+) 2445 WP_404335737.1 ATP-dependent Clp protease ATP-binding subunit -
  LG289_RS00500 (LG289_00500) radA 101304..102686 (+) 1383 WP_058382198.1 DNA repair protein RadA Machinery gene
  LG289_RS00505 (LG289_00505) - 102790..103890 (+) 1101 WP_101189178.1 PIN/TRAM domain-containing protein -
  LG289_RS00510 (LG289_00510) ispD 103903..104592 (+) 690 WP_101189179.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LG289_RS00515 (LG289_00515) ispF 104595..105095 (+) 501 WP_058382195.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LG289_RS00520 (LG289_00520) gltX 105138..106601 (+) 1464 WP_404335740.1 glutamate--tRNA ligase -
  LG289_RS00525 (LG289_00525) cysE 106911..107585 (+) 675 WP_101189181.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50240.03 Da        Isoelectric Point: 6.9059

>NTDB_id=614521 LG289_RS00500 WP_058382198.1 101304..102686(+) (radA) [Planococcus rifietoensis strain SLM-623]
MAKKKIKFICQSCGYESAKWMGKCPGCAAWNTMTEETEVAAPKGTRGAFQHSAPQIAQKATPINSIETKEEPRTKTEMEE
LNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQVSALLAKAGKKVLYISGEESIRQTKMRAERLDAVSGDLLIFAETNLELI
HHTIEEVEPDFVIVDSIQTVYHPEVTSAPGSVTQVRESTAELMRVAKTKNIAIFLVGHVTKEGQIAGPRILEHMVDTVLY
FEGERHHTYRILRSVKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSSGTAGSTVVASMEGTRPILVEIQALVTPSS
FNYPKRMATGIDQNRVSLLMAVLEKRVGLMLQSQDAYIKVAGGVKLDEPAIDLAVLASIVSSFRDIAPKVDDCIIGEVGL
TGEVRRVSRIEQRVQEAAKLGFKRAIIPKSNMGGWDFPEGIRVVGVETINEALKELFPQQ

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=614521 LG289_RS00500 WP_058382198.1 101304..102686(+) (radA) [Planococcus rifietoensis strain SLM-623]
ATGGCGAAGAAGAAAATAAAGTTCATCTGCCAATCCTGCGGTTATGAGTCTGCAAAATGGATGGGGAAATGCCCAGGTTG
TGCGGCATGGAATACGATGACAGAAGAAACGGAAGTTGCAGCACCGAAAGGCACAAGGGGGGCATTCCAGCATAGCGCAC
CGCAAATTGCCCAAAAAGCGACACCGATCAATTCGATTGAAACGAAAGAAGAGCCAAGGACGAAAACGGAAATGGAAGAA
TTGAACCGCGTTCTCGGCGGCGGGATTGTTTCAGGTTCGCTTGTTTTGATTGGGGGCGACCCAGGCATCGGGAAATCGAC
TTTGCTCTTGCAAGTATCGGCGCTTCTTGCGAAAGCTGGCAAGAAAGTGTTGTATATTTCAGGTGAGGAATCGATTCGCC
AAACGAAAATGCGGGCAGAGCGGCTGGATGCGGTTTCGGGAGACTTGTTGATTTTTGCGGAAACCAATTTGGAGCTGATC
CATCATACGATTGAGGAAGTAGAGCCGGATTTCGTTATTGTCGATTCAATTCAGACGGTTTATCATCCGGAAGTGACGTC
TGCGCCCGGCAGCGTGACACAAGTGCGTGAAAGCACGGCGGAATTGATGCGGGTGGCGAAAACAAAGAACATCGCAATTT
TCCTGGTCGGCCACGTGACGAAAGAAGGCCAGATTGCCGGACCTCGTATTTTGGAACATATGGTGGATACAGTGCTGTAT
TTTGAAGGAGAACGGCATCATACGTACCGCATTTTGCGCAGTGTTAAAAACCGCTTCGGTTCGACGAATGAAATTGCGAT
TTTCGAAATGCTACAAGGTGGTTTAAAGGAAGTATTGAATCCATCCGAGCTGTTTTTACAGGAACGTTCAAGCGGCACAG
CAGGATCGACGGTTGTCGCTTCCATGGAAGGGACACGGCCGATACTGGTGGAAATCCAGGCGCTGGTGACGCCGTCGAGT
TTTAATTATCCGAAGCGGATGGCGACAGGGATTGACCAAAACCGGGTATCGTTATTGATGGCGGTGCTTGAGAAGCGCGT
CGGCTTGATGCTGCAGTCGCAAGATGCATACATTAAAGTGGCAGGCGGCGTGAAGCTGGATGAACCCGCGATCGATCTTG
CCGTGCTCGCAAGCATTGTTTCGAGTTTCCGGGATATTGCACCGAAAGTGGATGATTGCATTATCGGTGAAGTCGGGTTG
ACCGGAGAGGTGCGCCGTGTGTCGCGCATCGAACAGCGCGTGCAGGAAGCGGCAAAGCTGGGCTTTAAGCGTGCCATCAT
CCCGAAATCGAATATGGGAGGTTGGGATTTTCCGGAAGGAATCCGCGTCGTTGGTGTTGAAACTATAAACGAGGCGCTGA
AGGAATTATTCCCGCAACAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(356-431)

AAA domain (AAA_25)

(74-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U2Q965

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.467

98.696

0.715
  radA Streptococcus pneumoniae Rx1

61.656

99.783

0.615
  radA Streptococcus pneumoniae D39

61.656

99.783

0.615
  radA Streptococcus pneumoniae R6

61.656

99.783

0.615
  radA Streptococcus pneumoniae TIGR4

61.656

99.783

0.615
  radA Streptococcus mitis NCTC 12261

61.656

99.783

0.615
  radA Streptococcus mitis SK321

61.656

99.783

0.615