Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NQD65_RS05550 Genome accession   NZ_CP101996
Coordinates   1068355..1069317 (-) Length   320 a.a.
NCBI ID   WP_309150558.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB1835     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063355..1074317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD65_RS05530 (NQD65_05540) dprA 1064556..1065398 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  NQD65_RS05535 (NQD65_05545) - 1065536..1066564 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  NQD65_RS05540 (NQD65_05550) - 1066626..1067387 (-) 762 WP_000614752.1 ABC transporter ATP-binding protein -
  NQD65_RS05545 (NQD65_05555) - 1067384..1068358 (-) 975 WP_000588576.1 iron chelate uptake ABC transporter family permease subunit -
  NQD65_RS05550 (NQD65_05560) ceuB 1068355..1069317 (-) 963 WP_309150558.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  NQD65_RS05555 (NQD65_05565) - 1069499..1070104 (-) 606 WP_000136507.1 sugar O-acetyltransferase -
  NQD65_RS05560 (NQD65_05570) - 1070125..1070886 (-) 762 WP_000201088.1 ribonuclease HII -
  NQD65_RS05565 (NQD65_05575) ylqF 1070873..1071724 (-) 852 WP_000201281.1 ribosome biogenesis GTPase YlqF -
  NQD65_RS05570 (NQD65_05580) - 1072000..1072572 (-) 573 WP_001231800.1 L,D-transpeptidase -
  NQD65_RS05575 (NQD65_05585) - 1072773..1074257 (-) 1485 WP_000256021.1 carbon starvation protein A -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34923.06 Da        Isoelectric Point: 8.4842

>NTDB_id=614517 NQD65_RS05550 WP_309150558.1 1068355..1069317(-) (ceuB) [Streptococcus agalactiae strain BCJB1835]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLTSRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAATVFLGTH
FQVLQSVNSWLQVNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGVAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=614517 NQD65_RS05550 WP_309150558.1 1068355..1069317(-) (ceuB) [Streptococcus agalactiae strain BCJB1835]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTGAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAACGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTAACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGCAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGTTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTATATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AGAATTTAGGGGTTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTAGGTAGTGCCTTTTTCCTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.335

99.688

0.472