Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG296_RS11405 Genome accession   NZ_CP085009
Coordinates   2302830..2304533 (-) Length   567 a.a.
NCBI ID   WP_107934859.1    Uniprot ID   A0A318TGQ8
Organism   Ureibacillus chungkukjangi strain SLM-173     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2297830..2309533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG296_RS11385 (LG296_11350) - 2298369..2299940 (-) 1572 WP_107934863.1 DUF342 domain-containing protein -
  LG296_RS11390 (LG296_11355) - 2300075..2300458 (-) 384 WP_107934862.1 phage holin -
  LG296_RS11395 (LG296_11360) spo0A 2300614..2301405 (-) 792 WP_107934861.1 sporulation transcription factor Spo0A -
  LG296_RS11400 (LG296_11365) - 2301700..2302650 (-) 951 WP_107934860.1 SpoIVB peptidase S55 domain-containing protein -
  LG296_RS11405 (LG296_11370) recN 2302830..2304533 (-) 1704 WP_107934859.1 DNA repair protein RecN Machinery gene
  LG296_RS11410 (LG296_11375) ahrC 2304632..2305081 (-) 450 WP_107934858.1 transcriptional regulator AhrC/ArgR -
  LG296_RS11415 (LG296_11380) - 2305186..2306004 (-) 819 WP_107934857.1 TlyA family RNA methyltransferase -
  LG296_RS11420 (LG296_11385) dxs 2306001..2307905 (-) 1905 WP_107934856.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG296_RS11425 (LG296_11390) - 2308118..2309002 (-) 885 WP_107934855.1 polyprenyl synthetase family protein -
  LG296_RS11430 (LG296_11395) - 2309005..2309235 (-) 231 WP_107934854.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64718.64 Da        Isoelectric Point: 4.8308

>NTDB_id=614466 LG296_RS11405 WP_107934859.1 2302830..2304533(-) (recN) [Ureibacillus chungkukjangi strain SLM-173]
MLKELSIRNFAIIDDLTVDFSEGLTVLTGETGAGKSIIIDAVHLLAGGRASLEFIRHGAKKAELTGLFMVLNESHPIYEK
LQEYGVDIDEGMIILRRDINENGKSVCRVNGKLVTLSILREIGSTLIDIHGQHESQELMDEKRHIYLLDHFAHNELAPIK
EKYTEKYQAYREFKREIASINIDEQRLAQRIDLYQFQIGELEEASLKLGEEEQLVEERRRLSNFHKIFERANIAYESISG
ELKGLDNIGDAMNALEDVVELDEQFKESTETVSSAFYALQDAAYQIKNVLDDLEFDPERLNDVEHRLAQYQTMKRKYGNT
VEEILIYFEKIQDELIQLQNRDETIQNYEKKLNKMEEELEHLALSLTKIRKQCATKLSEAIMEQLRDLHMEKAKFIVNFE
TLHSFDLNGKDYVSFYISTNVGEPPKSLPKIASGGELSRIMLALKTMFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISVSSQVLCISHLPQVAAMADQHYLIRKQVEQNRTYTTVSNIDIQNRVEEISRMMSGSEITDLTLQHASELLKLAEVRKQ
EMKNLFV

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=614466 LG296_RS11405 WP_107934859.1 2302830..2304533(-) (recN) [Ureibacillus chungkukjangi strain SLM-173]
TTGTTAAAGGAACTTAGTATTCGTAACTTCGCAATTATAGATGATTTAACTGTGGATTTTTCAGAGGGACTAACGGTTTT
AACAGGGGAGACAGGTGCAGGGAAGTCGATCATTATAGATGCTGTCCATTTACTCGCAGGTGGACGAGCTTCACTGGAAT
TTATAAGACATGGTGCGAAAAAGGCTGAGCTAACAGGGTTATTTATGGTTTTGAATGAAAGCCATCCTATTTATGAAAAA
CTTCAAGAATACGGAGTCGACATTGATGAGGGAATGATTATTCTTCGTCGAGACATCAACGAAAATGGAAAAAGTGTTTG
CCGTGTTAATGGGAAATTAGTAACACTTTCTATTCTTCGAGAAATTGGTTCCACATTAATTGACATTCATGGACAGCATG
AAAGCCAGGAGCTTATGGATGAAAAGAGACATATATATCTGCTTGACCATTTTGCCCATAATGAGTTAGCGCCAATCAAA
GAAAAATATACAGAAAAATATCAAGCATATAGAGAATTTAAGCGTGAAATTGCATCCATTAATATCGATGAACAACGTCT
TGCTCAAAGAATTGATTTATATCAATTCCAAATTGGTGAATTAGAAGAAGCAAGCTTGAAATTAGGAGAAGAAGAACAGC
TAGTAGAAGAACGTAGACGCTTATCTAATTTCCACAAAATTTTTGAACGCGCCAATATTGCCTATGAATCCATTTCTGGA
GAGTTGAAGGGCTTAGATAATATTGGGGATGCTATGAATGCTCTAGAGGATGTCGTCGAATTGGATGAGCAATTTAAAGA
ATCCACTGAAACGGTAAGCTCTGCTTTTTATGCACTGCAGGATGCTGCATATCAAATTAAAAATGTCCTAGATGATCTAG
AATTCGACCCAGAACGTTTAAATGATGTAGAGCATCGATTGGCACAATATCAAACGATGAAAAGAAAATATGGAAATACA
GTTGAAGAAATTTTAATTTATTTTGAGAAAATTCAAGATGAATTAATCCAACTTCAAAATCGAGATGAAACAATTCAAAA
TTACGAGAAAAAATTGAACAAGATGGAAGAAGAGCTTGAGCACTTAGCCCTTTCATTAACGAAGATTCGAAAGCAATGTG
CAACAAAATTAAGTGAAGCCATTATGGAGCAATTGCGTGATTTACATATGGAAAAAGCGAAATTCATTGTTAATTTTGAA
ACCTTACATAGTTTCGATTTGAATGGGAAAGACTATGTATCATTCTATATATCAACAAATGTAGGTGAACCACCTAAATC
ATTACCAAAAATTGCATCCGGTGGAGAGTTATCTCGAATTATGCTAGCACTTAAAACAATGTTTTCCTCATCTAACGGTA
TTACTTCGATTATTTTTGATGAGGTTGACACAGGTGTTAGTGGCCGTGTTGCACAAGCGATTGCTGAAAAAATTGCAGCT
ATTTCGGTTTCTTCACAAGTATTATGTATTTCCCATTTACCACAAGTTGCAGCAATGGCAGATCAGCATTATTTAATTCG
CAAACAGGTGGAACAAAATAGAACATATACAACGGTTTCTAATATTGATATTCAAAATCGAGTAGAAGAAATCAGTCGTA
TGATGAGTGGTTCAGAAATAACTGACCTTACATTACAGCACGCTTCTGAACTTTTAAAACTTGCCGAAGTTAGAAAACAA
GAAATGAAAAACTTGTTTGTTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A318TGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.539

100

0.529