Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG311_RS13930 Genome accession   NZ_CP085008
Coordinates   2682045..2683751 (-) Length   568 a.a.
NCBI ID   WP_404346778.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain SLM-179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2677045..2688751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG311_RS13905 (LG311_13850) - 2677595..2677837 (+) 243 WP_223489928.1 DUF2627 domain-containing protein -
  LG311_RS13910 (LG311_13855) - 2677866..2678591 (-) 726 WP_404346776.1 glycerophosphodiester phosphodiesterase -
  LG311_RS13915 (LG311_13860) - 2678684..2678839 (+) 156 WP_010194889.1 YycC family protein -
  LG311_RS13920 (LG311_13865) spo0A 2678935..2679726 (-) 792 WP_088018747.1 sporulation transcription factor Spo0A -
  LG311_RS13925 (LG311_13870) spoIVB 2680000..2681295 (-) 1296 WP_404346777.1 SpoIVB peptidase -
  LG311_RS13930 (LG311_13875) recN 2682045..2683751 (-) 1707 WP_404346778.1 DNA repair protein RecN Machinery gene
  LG311_RS13935 (LG311_13880) ahrC 2683774..2684223 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  LG311_RS13940 (LG311_13885) - 2684316..2685152 (-) 837 WP_404346779.1 TlyA family RNA methyltransferase -
  LG311_RS13945 (LG311_13890) dxs 2685159..2687051 (-) 1893 WP_404346780.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG311_RS13950 (LG311_13895) - 2687074..2687673 (-) 600 WP_404346781.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64368.14 Da        Isoelectric Point: 4.9418

>NTDB_id=614422 LG311_RS13930 WP_404346778.1 2682045..2683751(-) (recN) [Sutcliffiella horikoshii strain SLM-179]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDEKHPAYRI
CQELGIEIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGAAVQKEL
KEYRNIYSSFKDVEKRLLELTENEQKVAHRLDLLEFQAEEISNAQLTVNEEDELLEERNKISNYERLYQSLNNCYHAMHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGTT
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNMD
VKKEKVSRDVVFGKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=614422 LG311_RS13930 WP_404346778.1 2682045..2683751(-) (recN) [Sutcliffiella horikoshii strain SLM-179]
ATGATTGCTGAATTAACTATTAAAAATTTTGCTATTATTGAATCCCTTTCTGTTTCTTTTGACAAAGGGTTAACTGTTTT
AACCGGGGAGACCGGAGCGGGTAAATCCATTATCATTGATGCCATCCACTTGCTGGCGGGTGGACGTGGATCACATGAGT
TTGTCCGTTTCGGTGAAAAACGAGCGGAACTCGAAGGCTTGTTCCTTCTTGAAGATGAGAAGCATCCTGCCTATAGAATT
TGTCAGGAGCTTGGTATTGAGATAGAAGACGAGATGGTTGTCTTGAGACGGGAAATTCATGCTACAGGGAAAAGTGTTTG
CCGTGTTAATGGAAAGCTTGTCACCATAGCCCTGTTAAGGGAAGTCGGTCAGACATTGGTGGACATTCATGGGCAGCACG
AACACCAGGAACTGATGGACCCGGATTTGCATCTTTCGCTTTTAGATCAGTTTGGAGGAGCGGCTGTTCAAAAGGAACTT
AAAGAGTATAGGAACATTTATTCATCTTTTAAGGATGTAGAAAAAAGGCTGCTAGAACTCACGGAAAATGAACAAAAGGT
TGCACATCGCCTTGATTTGTTGGAGTTCCAAGCAGAAGAAATCAGCAATGCGCAATTAACCGTCAATGAAGAAGACGAGC
TGCTCGAGGAACGGAATAAAATCAGTAACTATGAACGACTTTACCAATCGCTCAACAACTGTTACCATGCGATGCACGGC
GAACAAAAGGGACTTGATTGGGTCGGACAAGCCATGTCTGAATCCGAGGGTCTCGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCCAATTCTTATTATCAATTAGAAGAACTATCTTATCGTATTAGAGATGAAATAGATCAGCTTG
AGTTTGATCCAAACCGCCTTGATTTTATTGAAGGCAGATTAAATGAAATCAAGCAATTGAAACGGAAATACGGTACTACG
GTCGCTGAAGTTTTAGAATATGCTTCGAAAATAGAAGAAGAGCTTGAGACTTTGCAAAACCGTGATTCGCACATTCATCA
GTTGCAGGAGTCCCTTGAGTCACTTAAACAAGACCTTGCACTTGAAGCGAAATCGCTAACTGATGCGCGTAGAAAAGCGT
CCGAGAAACTAATGAAGAGCATCCACAAAGAGCTTAAAGACCTGTACTTGGAAAAAGCCATCTTTGATGTGAATATGGAC
GTGAAAAAAGAAAAAGTATCCAGGGATGTCGTATTCGGTAAGAACGGCGTGGATGTTGTGGAGTTCTACCTTACAACAAA
CCCGGGGGAACCATTGAAGCCAATGGCAAAAGTAGCTTCAGGCGGGGAACTTTCGAGGATCATGCTTGCATTGAAGAGTA
TCTTCTCAAGACACCAAGGGATCACTTCCATCATTTTTGATGAAGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTCTCGGTTGATTCACAAGTCCTTTGTATCTCCCACTTGCCTCAAGTTGCAGCGATGTC
AGACACTCATCTATTCATCAGCAAGGAAGTCTCCGGTGAACGCACGAAAACCAAAGTGCGTGGACTGGATCAGGACGAAA
AGGTGCGTGAAATCGGCCGGATGATTTCTGGCGTGGAGATTACTTCATTGACGAAGGAGCATGCACGCGAGTTGTTAGAG
ATAGCCGGGAGTATTAAGCAGGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.201

100

0.6