Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   EL334_RS08240 Genome accession   NZ_AP019192
Coordinates   1539055..1541025 (-) Length   656 a.a.
NCBI ID   WP_000058253.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1534055..1546025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS08210 (ASP0581_15510) - 1534246..1534923 (-) 678 WP_000624092.1 tRNA (adenine(22)-N(1))-methyltransferase -
  EL334_RS08215 (ASP0581_15520) - 1535471..1535905 (+) 435 WP_033705404.1 hypothetical protein -
  EL334_RS08220 (ASP0581_15540) - 1536096..1536527 (+) 432 WP_033705402.1 protein kinase domain-containing protein -
  EL334_RS12760 - 1536537..1536608 (-) 72 Protein_1551 IS3 family transposase -
  EL334_RS08230 - 1536646..1537460 (+) 815 Protein_1552 IS5-like element IS1515 family transposase -
  EL334_RS08235 (ASP0581_15570) - 1537425..1538681 (-) 1257 Protein_1553 IS3 family transposase -
  EL334_RS08240 (ASP0581_15590) recP/tkt 1539055..1541025 (-) 1971 WP_000058253.1 transketolase Machinery gene
  EL334_RS08245 (ASP0581_15600) alsE 1541062..1541757 (-) 696 WP_126432082.1 D-allulose 6-phosphate 3-epimerase -
  EL334_RS08250 (ASP0581_15610) - 1541768..1542853 (-) 1086 WP_000912154.1 PTS fructose transporter subunit IIC -
  EL334_RS08255 (ASP0581_15620) - 1542879..1543190 (-) 312 WP_000706301.1 PTS fructose transporter subunit IIB -
  EL334_RS08260 (ASP0581_15630) - 1543218..1543667 (-) 450 WP_000402984.1 fructose PTS transporter subunit IIA -
  EL334_RS08265 (ASP0581_15640) - 1543645..1544073 (-) 429 WP_001061751.1 PTS sugar transporter subunit IIA -
  EL334_RS08270 (ASP0581_15650) - 1544066..1545529 (-) 1464 WP_000087923.1 BglG family transcription antiterminator -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70871.70 Da        Isoelectric Point: 4.9703

>NTDB_id=61442 EL334_RS08240 WP_000058253.1 1539055..1541025(-) (recP/tkt) [Streptococcus pneumoniae strain ASP0581]
MSLQSVNAIRFLGVDAINKSNSGHPGIVMGAAPMAYSLFTKHLRITPEQPNWINRDRFILSAGHGSMLLYALLHLTGYKD
VSMDEIKNFRQWGSKTPGHPEVTHTSGVDATSGPLGQGISTAVGFAQAERFLAAKYNKDGFPIFDHYTYVIAGDGDFMEG
VSAEAASYAGHQALDKLIVLYDSNDICLDGETKDTFSENVRARYDAYGWHTVLVEDGTDLAAISTAIETAKFSGKPSLIE
VKTVIGYGSPNKSGTNAVHGAPLGAEETGATRKFLGWDYDPFEVPEEVYSDFKTNVADRGQEAYDAWASLVSDYKVAYPE
VASEIDAIVAGKSPVTITEKDFPVYENGFSQATRNSSQDAINTAAAVLPTFLGGSADLAHSNMTYIKADGLQDKYNPLNR
NIQFGVREFAMGTILNGMALHGGLRVYGGTFFVFSDYVKAAIRLSAIQELPVTYVFTHDSIAVGEDGPTHEPVEHLAGLR
SMPNLTVIRPADARETQAAWHHALTSTTTPTVIVLTRQNLVVEEGTDFGKVAKGAYVVYDTPGFDTIIIATGSEVNLAIK
AAKELVLQGGKVRVVSMPSTELFDAQDATYKEDILPSKTRRRVAIEMAATQSWYKYVGLDGAVIGIDIFGASAPAQTVID
NYGFTVENIVAQVKSL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=61442 EL334_RS08240 WP_000058253.1 1539055..1541025(-) (recP/tkt) [Streptococcus pneumoniae strain ASP0581]
ATGTCACTACAATCAGTTAACGCCATTCGTTTTCTTGGCGTAGATGCTATTAACAAATCTAATTCTGGTCACCCGGGAAT
CGTCATGGGTGCTGCGCCAATGGCTTATAGCTTATTTACAAAGCACCTTAGAATTACACCTGAGCAGCCAAACTGGATTA
ACCGAGATCGCTTTATCTTGTCTGCGGGTCATGGATCAATGCTACTGTATGCTCTCTTGCATTTAACAGGGTATAAGGAT
GTATCCATGGACGAGATTAAAAATTTCCGGCAATGGGGATCTAAGACACCTGGTCATCCTGAAGTGACGCATACGTCTGG
TGTGGATGCGACATCTGGTCCGCTTGGTCAGGGGATTTCTACTGCCGTTGGTTTCGCCCAAGCAGAGCGTTTTTTAGCTG
CTAAGTACAACAAAGATGGTTTTCCTATTTTTGACCATTATACTTATGTTATCGCTGGAGACGGTGACTTCATGGAAGGA
GTGTCTGCGGAGGCGGCTTCTTATGCAGGTCATCAAGCTTTAGATAAGCTTATCGTCCTCTACGACTCCAACGACATCTG
CTTGGATGGTGAGACCAAAGATACTTTCTCTGAAAATGTTCGCGCCCGTTACGATGCTTATGGTTGGCATACAGTTCTGG
TAGAAGATGGAACAGATTTAGCAGCAATTTCTACAGCAATTGAGACGGCCAAGTTTTCTGGTAAGCCGAGTTTGATTGAA
GTGAAAACGGTAATTGGTTACGGCTCACCCAATAAAAGTGGTACAAATGCTGTTCATGGTGCACCACTAGGAGCAGAAGA
AACAGGAGCAACTCGTAAGTTTTTGGGATGGGATTACGATCCATTTGAAGTACCAGAGGAAGTATATTCTGATTTCAAGA
CAAATGTAGCGGATCGTGGTCAGGAGGCATACGATGCTTGGGCTAGTTTGGTGTCTGATTACAAGGTTGCTTATCCCGAA
GTTGCTAGTGAGATTGACGCTATTGTAGCTGGAAAATCCCCTGTAACCATTACTGAAAAAGACTTCCCTGTCTATGAGAA
TGGCTTCTCTCAAGCAACTCGTAATTCGTCCCAAGATGCTATTAATACAGCAGCAGCAGTTTTACCAACCTTCTTAGGTG
GATCGGCAGACTTAGCTCACTCTAACATGACCTACATCAAGGCAGATGGCTTACAAGATAAATATAATCCATTAAACCGC
AATATTCAGTTTGGGGTACGTGAATTTGCCATGGGAACAATCCTCAATGGAATGGCTCTTCATGGTGGTTTACGAGTTTA
TGGCGGAACCTTCTTTGTTTTCTCTGACTACGTCAAAGCTGCTATTCGGCTATCAGCCATTCAGGAGTTGCCTGTAACTT
ATGTCTTTACCCATGATTCAATTGCCGTTGGTGAAGATGGTCCAACTCATGAACCAGTTGAACATTTGGCAGGTTTACGC
TCAATGCCAAACTTGACTGTTATCCGTCCAGCGGATGCCCGTGAAACTCAAGCGGCTTGGCATCATGCCTTGACCAGTAC
CACCACTCCAACTGTCATTGTCTTAACCCGTCAAAACTTGGTAGTTGAAGAAGGGACAGACTTTGGTAAGGTCGCTAAAG
GAGCCTACGTCGTGTATGATACCCCGGGATTTGATACTATTATCATTGCTACAGGATCTGAGGTCAATCTAGCTATCAAA
GCTGCTAAGGAATTGGTTTTACAAGGTGGTAAAGTACGTGTGGTATCTATGCCCTCAACCGAACTATTTGATGCTCAAGA
TGCTACCTACAAGGAAGACATTTTACCATCTAAGACTCGTCGTCGTGTGGCCATTGAAATGGCAGCGACCCAAAGTTGGT
ACAAGTATGTTGGTTTGGATGGCGCGGTCATCGGTATTGACATCTTCGGTGCGTCTGCCCCAGCTCAGACTGTGATTGAT
AATTATGGATTTACGGTAGAGAATATCGTTGCTCAAGTTAAGTCCCTATAG

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(536-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

99.695

100

0.997

Multiple sequence alignment