Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG305_RS06270 Genome accession   NZ_CP085004
Coordinates   1196008..1197705 (+) Length   565 a.a.
NCBI ID   WP_214831844.1    Uniprot ID   -
Organism   Exiguobacterium aurantiacum strain SLM-187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191008..1202705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG305_RS06245 (LG305_06240) xseB 1191454..1191684 (+) 231 WP_029595272.1 exodeoxyribonuclease VII small subunit -
  LG305_RS06250 (LG305_06245) - 1191681..1192559 (+) 879 WP_404354402.1 polyprenyl synthetase family protein -
  LG305_RS06255 (LG305_06250) dxs 1192683..1194575 (+) 1893 WP_404354403.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG305_RS06260 (LG305_06255) - 1194582..1195403 (+) 822 WP_404354404.1 TlyA family RNA methyltransferase -
  LG305_RS06265 (LG305_06260) ahrC 1195545..1195994 (+) 450 WP_021067696.1 transcriptional regulator AhrC/ArgR -
  LG305_RS06270 (LG305_06265) recN 1196008..1197705 (+) 1698 WP_214831844.1 DNA repair protein RecN Machinery gene
  LG305_RS06275 (LG305_06270) spo0A 1197706..1198437 (+) 732 WP_021067694.1 sporulation transcription factor Spo0A -
  LG305_RS06280 (LG305_06275) - 1199053..1199301 (-) 249 WP_021067693.1 DUF2627 family protein -
  LG305_RS06285 (LG305_06280) - 1199433..1201070 (+) 1638 WP_404354405.1 sigma 54-interacting transcriptional regulator -
  LG305_RS06290 (LG305_06285) yqiS 1201193..1202089 (+) 897 WP_021067691.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63444.26 Da        Isoelectric Point: 4.7352

>NTDB_id=614374 LG305_RS06270 WP_214831844.1 1196008..1197705(+) (recN) [Exiguobacterium aurantiacum strain SLM-187]
MLAELSIKQFAIIDELNITFNRGMTVLTGETGAGKSILLDAIGLLVGGRGSSEFVRYGQDKAEIEGLFNVEPDHPIIEAA
TQYGIEIEEGTVILRRDLHSSGKSVCRVNGKMMPLSTLRELGRLLVDIHGQHEHQHLMDAEYHLGILDSFAETELAPLLE
RYREAYVDWKNVADELKRLSQSEQELAQRMDLLAFQTNEIEAAELKVGEEQALTEERNELANFERIHQHVRLSYEAVADE
AKGLDQIGIAMREMEEASSLSTSLAPMSETISNAYFLLEDAKFQLRDQLDSLEFDPIRLDEIETRLALFQQLKRKYGATI
DEVITYGEKIADELKSMTNREEHLQELSDRLARLEQKVRTTGLALSAARKQAATELEKAIQRELKELYMEKTQFEVRFKE
GSFKADGLDQVEFYMMTNVGEPFKPLAKVASGGELSRVMLALKSIFSRTVGVASIIFDEVDTGVSGRVAQAMGEKIFRLS
VGSQVLCITHLAQVAAMADQHLYITKTETDERTKTNVSPLGHAERVDELGRMIAGAQMTELTKQHVEELLTMSLQLKRKF
IEGVS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=614374 LG305_RS06270 WP_214831844.1 1196008..1197705(+) (recN) [Exiguobacterium aurantiacum strain SLM-187]
ATGTTAGCAGAACTATCGATCAAACAATTTGCGATCATCGATGAACTGAATATCACGTTCAACCGTGGGATGACCGTATT
GACGGGTGAGACCGGAGCCGGAAAATCAATCTTGCTCGATGCGATCGGCCTGCTCGTCGGGGGCCGAGGTTCGAGCGAGT
TCGTCCGCTATGGCCAAGACAAGGCGGAGATCGAAGGGCTGTTCAACGTCGAACCAGACCATCCGATCATCGAGGCGGCG
ACCCAATACGGCATCGAGATTGAAGAAGGGACCGTCATTTTGCGCCGCGACCTACATAGCAGCGGAAAGAGCGTTTGCCG
TGTCAACGGCAAGATGATGCCGCTGTCGACGCTTCGTGAGCTCGGACGGCTGCTCGTCGATATTCACGGCCAGCATGAAC
ACCAGCACTTGATGGATGCCGAATACCATCTCGGCATTTTAGATAGTTTTGCCGAAACCGAGCTTGCCCCGCTCCTCGAA
CGTTATCGAGAGGCTTACGTCGATTGGAAGAACGTCGCCGACGAGTTGAAACGATTGAGTCAAAGCGAACAAGAGCTGGC
CCAGCGTATGGACCTGCTCGCGTTCCAGACGAATGAGATTGAGGCGGCCGAACTGAAGGTCGGGGAAGAACAGGCGCTCA
CCGAGGAACGGAACGAGCTCGCCAACTTCGAGCGGATTCATCAGCACGTCCGGTTATCGTATGAGGCCGTCGCGGATGAG
GCGAAAGGTCTCGATCAAATCGGAATCGCCATGCGCGAGATGGAGGAAGCTTCCTCATTGTCGACTTCGCTCGCGCCGAT
GTCCGAGACGATCTCGAACGCTTACTTCTTGCTCGAGGACGCCAAATTCCAGTTGCGTGATCAGCTCGATTCACTCGAAT
TTGACCCGATTCGACTTGATGAGATTGAGACGAGGCTCGCCTTGTTTCAACAGTTGAAACGGAAATACGGGGCCACGATC
GACGAGGTCATCACGTATGGGGAGAAAATCGCCGACGAGTTAAAATCGATGACGAATCGGGAAGAACATTTGCAAGAACT
ATCGGACCGGCTCGCCCGGCTCGAACAAAAAGTGCGTACGACCGGACTGGCGTTATCGGCGGCACGCAAACAAGCGGCAA
CAGAGCTCGAGAAAGCGATTCAGCGTGAATTGAAGGAATTGTATATGGAAAAGACCCAGTTCGAAGTCCGGTTCAAAGAA
GGATCGTTCAAAGCGGACGGACTCGACCAAGTCGAGTTCTATATGATGACGAACGTCGGCGAACCGTTCAAGCCGCTCGC
CAAAGTCGCTTCAGGCGGAGAACTGTCCCGTGTCATGCTCGCGTTGAAGTCGATTTTCTCGCGCACTGTCGGTGTCGCAT
CCATCATTTTCGACGAAGTCGACACTGGTGTGTCGGGACGTGTTGCCCAAGCGATGGGCGAGAAGATTTTCCGGTTATCG
GTCGGATCGCAAGTGCTCTGCATCACCCATTTGGCCCAAGTGGCCGCCATGGCGGACCAGCATTTGTATATCACGAAGAC
GGAGACGGATGAGCGCACGAAGACGAACGTCTCGCCGCTCGGGCATGCCGAACGGGTCGATGAGCTCGGACGGATGATTG
CCGGGGCGCAGATGACGGAATTGACGAAACAACACGTGGAGGAACTGCTCACTATGTCTCTCCAATTAAAACGGAAGTTT
ATCGAAGGGGTGTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.927

100

0.547