Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG329_RS12175 Genome accession   NZ_CP084992
Coordinates   2510109..2511062 (+) Length   317 a.a.
NCBI ID   WP_404451093.1    Uniprot ID   -
Organism   Virgibacillus necropolis strain WLG-406     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2505109..2516062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG329_RS12155 (LG329_12145) - 2506222..2507085 (+) 864 WP_404451089.1 VanW family protein -
  LG329_RS12160 (LG329_12150) - 2507152..2507601 (+) 450 WP_404451090.1 DUF2188 domain-containing protein -
  LG329_RS12165 (LG329_12155) - 2507744..2508604 (+) 861 WP_404451091.1 MBL fold metallo-hydrolase -
  LG329_RS12170 (LG329_12160) - 2508677..2509399 (+) 723 WP_404451092.1 DsbA family protein -
  LG329_RS12175 (LG329_12165) ceuB 2510109..2511062 (+) 954 WP_404451093.1 ABC transporter permease Machinery gene
  LG329_RS12180 (LG329_12170) - 2511052..2512002 (+) 951 WP_404451094.1 iron chelate uptake ABC transporter family permease subunit -
  LG329_RS12185 (LG329_12175) - 2511996..2512754 (+) 759 WP_404451095.1 ABC transporter ATP-binding protein -
  LG329_RS12190 (LG329_12180) - 2512775..2513716 (+) 942 WP_404451096.1 siderophore ABC transporter substrate-binding protein -
  LG329_RS12195 (LG329_12185) - 2513882..2515615 (+) 1734 WP_404451097.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34836.05 Da        Isoelectric Point: 9.5891

>NTDB_id=614269 LG329_RS12175 WP_404451093.1 2510109..2511062(+) (ceuB) [Virgibacillus necropolis strain WLG-406]
MKIRYLLITVCILSITSIFVGVSNVSVWDVFHLSEDQIDILMISRIPRLASILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSLMVFTSASPLEKMLVSFLFALIGTFIFMKILDKIKFKDAIFIPLVGLMFGNIISSGATFFAYKNDLI
QNMSSWMQGDFSMIMSGNYELMYVSIPILIVAYLFANKFTIAGMGEDFSKNLGLNYKQVVNIGLIIVALVTASVVLSVGV
IPFLGLIIPNIVTIYQGDHLKKSLLHTALLGAAFVLVCDIIGRVIIYPYEIPISLTVGVIGSGVFIFLLLRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=614269 LG329_RS12175 WP_404451093.1 2510109..2511062(+) (ceuB) [Virgibacillus necropolis strain WLG-406]
ATGAAAATTCGTTACCTTTTAATTACTGTTTGTATATTATCCATCACTTCCATATTTGTGGGCGTTTCGAATGTTTCGGT
TTGGGATGTTTTTCATTTGTCAGAAGACCAGATTGACATTTTGATGATCAGTCGGATTCCGAGGTTAGCGAGTATTTTAA
TTGCTGGAATGAGCATGAGTATTTGCGGGCTAATTATGCAGCAATTGAGCCGTAATAAATTTGTTTCACCAACAACAGCA
GGTACACTTGATTCTGCCCGACTTGGAATTTTGGTTTCATTAATGGTCTTTACATCTGCAAGTCCCTTAGAAAAAATGTT
GGTTTCCTTTTTATTCGCGTTGATTGGGACATTCATTTTTATGAAAATCCTCGACAAAATTAAATTTAAAGATGCTATTT
TCATTCCCTTAGTAGGGCTGATGTTTGGGAATATTATAAGCTCGGGAGCAACTTTTTTTGCTTACAAAAATGATCTTATC
CAAAACATGTCTTCCTGGATGCAAGGGGACTTTTCCATGATCATGAGTGGGAATTATGAATTAATGTATGTTAGTATTCC
GATCCTAATCGTTGCTTATCTGTTTGCTAACAAATTTACCATAGCAGGAATGGGAGAGGATTTCTCCAAAAATTTGGGGC
TCAATTACAAGCAGGTAGTGAATATTGGATTAATCATTGTTGCACTAGTTACTGCTTCTGTCGTTTTATCCGTCGGGGTT
ATTCCATTTTTAGGACTGATCATTCCGAATATCGTAACCATTTACCAAGGGGATCACTTGAAGAAAAGCTTATTACATAC
AGCACTATTAGGTGCAGCGTTTGTCCTCGTTTGTGACATTATCGGTCGAGTCATTATCTATCCATATGAAATTCCAATCA
GCTTGACTGTTGGGGTAATTGGAAGTGGCGTATTTATATTTTTACTGCTAAGGAGAAAGAAATATGGGCTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536