Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   NQD67_RS01660 Genome accession   NZ_CP101994
Coordinates   287718..288452 (+) Length   244 a.a.
NCBI ID   WP_000589158.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain BCJB3343     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 282718..293452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQD67_RS01645 (NQD67_01645) - 283640..285070 (+) 1431 WP_001217287.1 helix-turn-helix domain-containing protein -
  NQD67_RS01650 (NQD67_01650) recP/tkt 285195..287180 (+) 1986 WP_000141871.1 transketolase Machinery gene
  NQD67_RS01655 (NQD67_01655) - 287393..287698 (+) 306 WP_000711205.1 bacteriocin immunity protein -
  NQD67_RS01660 (NQD67_01660) pptA 287718..288452 (+) 735 WP_000589158.1 ABC transporter ATP-binding protein Regulator
  NQD67_RS01665 (NQD67_01665) - 288456..290060 (+) 1605 WP_001104589.1 hypothetical protein -
  NQD67_RS01670 (NQD67_01670) - 290268..291653 (-) 1386 WP_000085847.1 PTS transporter subunit EIIC -
  NQD67_RS01675 (NQD67_01675) proB 291794..292597 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 27546.69 Da        Isoelectric Point: 4.6741

>NTDB_id=614265 NQD67_RS01660 WP_000589158.1 287718..288452(+) (pptA) [Streptococcus agalactiae strain BCJB3343]
MIKFEHVSKVYGEKEALSDLTLSIKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMQYPDKDLETIYLELAGRQA
NREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=614265 NQD67_RS01660 WP_000589158.1 287718..288452(+) (pptA) [Streptococcus agalactiae strain BCJB3343]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGGGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTATTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTTTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGCAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AATAGGGAGGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.655

97.541

0.377
  pptA Streptococcus salivarius strain HSISS4

38.235

97.541

0.373