Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EL334_RS06230 Genome accession   NZ_AP019192
Coordinates   1166047..1167714 (-) Length   555 a.a.
NCBI ID   WP_000923569.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ASP0581     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1161047..1172714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS06200 - 1161190..1161997 (-) 808 Protein_1169 IS5 family transposase -
  EL334_RS06205 (ASP0581_11630) - 1162005..1162307 (-) 303 WP_000590580.1 PTS sugar transporter subunit IIB -
  EL334_RS06210 (ASP0581_11640) - 1162345..1162821 (-) 477 WP_033705444.1 PTS sugar transporter subunit IIA -
  EL334_RS12250 (ASP0581_11650) - 1163002..1163334 (+) 333 WP_232051749.1 hypothetical protein -
  EL334_RS06220 (ASP0581_11660) lepA 1163415..1165238 (-) 1824 WP_033705445.1 translation elongation factor 4 -
  EL334_RS06225 (ASP0581_11670) - 1165317..1166045 (-) 729 WP_033705446.1 metallophosphoesterase family protein -
  EL334_RS06230 (ASP0581_11680) recN 1166047..1167714 (-) 1668 WP_000923569.1 DNA repair protein RecN Machinery gene
  EL334_RS06235 (ASP0581_11690) - 1167721..1168152 (-) 432 WP_001034415.1 arginine repressor -
  EL334_RS06240 (ASP0581_11700) - 1168145..1168960 (-) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  EL334_RS06245 (ASP0581_11710) - 1168953..1169828 (-) 876 WP_000743808.1 polyprenyl synthetase family protein -
  EL334_RS06250 (ASP0581_11720) - 1169825..1170037 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  EL334_RS06255 (ASP0581_11730) xseA 1170015..1171355 (-) 1341 WP_033705447.1 exodeoxyribonuclease VII large subunit -
  EL334_RS06260 (ASP0581_11740) udk 1171483..1172121 (-) 639 WP_033705448.1 uridine kinase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62804.23 Da        Isoelectric Point: 4.6211

>NTDB_id=61426 EL334_RS06230 WP_000923569.1 1166047..1167714(-) (recN) [Streptococcus pneumoniae strain ASP0581]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEADIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=61426 EL334_RS06230 WP_000923569.1 1166047..1167714(-) (recN) [Streptococcus pneumoniae strain ASP0581]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGTAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATTGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGACATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTTTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCAAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.782

100

0.438

Multiple sequence alignment