Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG329_RS02240 Genome accession   NZ_CP084992
Coordinates   442222..443949 (-) Length   575 a.a.
NCBI ID   WP_404452963.1    Uniprot ID   -
Organism   Virgibacillus necropolis strain WLG-406     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437222..448949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG329_RS02225 (LG329_02230) - 439093..439332 (+) 240 WP_404452962.1 DUF2627 domain-containing protein -
  LG329_RS02230 (LG329_02235) spo0A 439680..440408 (-) 729 WP_404456375.1 sporulation transcription factor Spo0A -
  LG329_RS02235 (LG329_02240) spoIVB 440704..441921 (-) 1218 WP_404456377.1 SpoIVB peptidase -
  LG329_RS02240 (LG329_02245) recN 442222..443949 (-) 1728 WP_404452963.1 DNA repair protein RecN Machinery gene
  LG329_RS02245 (LG329_02250) ahrC 443977..444426 (-) 450 WP_404452964.1 transcriptional regulator AhrC/ArgR -
  LG329_RS02250 (LG329_02255) - 444461..445288 (-) 828 WP_404452965.1 TlyA family RNA methyltransferase -
  LG329_RS02255 (LG329_02260) - 445311..445910 (-) 600 WP_404452966.1 hypothetical protein -
  LG329_RS02260 (LG329_02265) - 446657..447541 (-) 885 WP_404452967.1 polyprenyl synthetase family protein -
  LG329_RS02265 (LG329_02270) - 447544..447774 (-) 231 WP_404452968.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65433.22 Da        Isoelectric Point: 5.0471

>NTDB_id=614245 LG329_RS02240 WP_404452963.1 442222..443949(-) (recN) [Virgibacillus necropolis strain WLG-406]
MLTELSIHDFAIIDELSLTFHEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGTKKAEIEGLFSIDSRKHPIYKV
GRNYGIEISDNMVVLQRTITSGGKSICRVNGKLVTLAILKEFGRTLIDIHSQHETQALMEPENHIDLLDLYDPEVINQAK
LAYHQIYERLQTLRKRYKELSENEQEVAHRLDLLTFQMEELEQANLIPNEDDTLEEERSNLANYDRIYVGLQDAYNALYG
EQKGIEWLSMSLRALEDNKNYDPFMAKKAEELANHYYMVEELSYDLRNYSDTLQHDPDRLNEIESRLNEINRLKKKYGST
VNEIIDYMGKIQEEIEEITNKDSHLYKLENQIDETKQDAYLEAKQLHDIRKKAAGDLTKEIHYELKDLYLEKATFSIAFA
SKEDVESDNGINPPPLKLHKNGFDFITFLISTNPGEPLKELNKVASGGELSRIMLALKKIFAKHQGVTSVIFDEVDTGVS
GRVAQAIAEKIGHVSEKSQVLCITHLPQVAAMADTHNLIEKVEKDNRTITYVKELSKDETIDELSRMITGAKLTETARQH
AKEMLILADSIKQKI

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=614245 LG329_RS02240 WP_404452963.1 442222..443949(-) (recN) [Virgibacillus necropolis strain WLG-406]
ATGTTAACAGAACTATCTATTCATGATTTCGCAATAATTGATGAGCTTTCCTTAACATTTCATGAAGGTCTAACTGTCTT
AACAGGTGAAACTGGGGCTGGAAAATCAATTATCATAGATGCAGTTCAGTTATTGGCTGGTGGACGTGGATCGGTTGAAT
TTGTAAGGCATGGTACAAAAAAAGCTGAAATAGAAGGTTTGTTTTCAATCGATAGCCGGAAGCATCCTATATATAAAGTG
GGAAGAAATTATGGAATCGAAATTTCAGATAATATGGTTGTATTACAGCGTACGATTACTTCAGGTGGAAAAAGCATTTG
TCGTGTAAATGGAAAATTAGTTACCCTGGCCATTTTAAAAGAATTCGGAAGAACACTCATCGACATACATAGTCAACATG
AAACGCAAGCTTTAATGGAACCTGAAAACCATATTGATCTTCTCGATTTATATGATCCAGAAGTGATCAATCAAGCAAAA
CTTGCATACCATCAGATCTATGAGCGATTACAAACACTTCGAAAAAGATATAAAGAACTTAGTGAGAACGAACAGGAAGT
GGCTCATCGATTAGATCTTTTAACATTCCAAATGGAAGAATTGGAACAAGCCAACTTAATCCCAAATGAGGATGATACAT
TAGAGGAAGAACGAAGTAATTTAGCTAATTATGATCGTATCTATGTGGGACTTCAGGATGCGTATAATGCATTATATGGA
GAACAAAAAGGAATTGAATGGTTAAGTATGTCACTACGGGCTTTAGAGGATAATAAGAACTATGATCCGTTTATGGCAAA
AAAGGCTGAAGAACTTGCGAATCATTATTACATGGTCGAAGAATTATCCTATGATTTACGTAATTATAGCGATACTTTGC
AGCATGACCCTGATCGATTAAATGAAATCGAATCAAGATTAAATGAAATTAATCGATTAAAAAAGAAATATGGTTCTACA
GTTAATGAAATTATCGATTATATGGGAAAGATACAAGAAGAAATCGAAGAAATAACAAACAAGGATTCCCATTTATATAA
ATTGGAAAATCAAATTGACGAAACTAAACAAGATGCATATTTAGAAGCAAAACAGTTACATGATATTAGAAAAAAAGCTG
CAGGAGATTTAACTAAAGAGATACATTACGAATTAAAAGATTTATATCTGGAAAAGGCTACTTTTTCAATAGCATTTGCA
AGCAAAGAGGATGTGGAATCCGATAATGGTATTAATCCTCCTCCTTTAAAGTTACATAAAAATGGATTTGATTTCATTAC
ATTCTTGATATCCACTAACCCAGGTGAACCACTTAAAGAATTAAATAAGGTTGCTTCTGGTGGAGAGCTTTCCAGAATAA
TGTTGGCGCTTAAAAAGATATTTGCGAAACATCAGGGTGTTACAAGTGTTATTTTTGATGAAGTGGATACTGGAGTAAGT
GGACGTGTTGCTCAGGCCATCGCAGAAAAAATAGGTCATGTTTCGGAAAAATCGCAAGTTTTATGTATTACACATTTACC
TCAAGTTGCAGCAATGGCAGATACGCATAATTTAATTGAAAAAGTTGAAAAAGATAACCGAACGATTACTTATGTTAAGG
AACTTTCAAAGGATGAAACAATTGATGAATTAAGTAGAATGATCACAGGTGCTAAGTTAACCGAGACAGCAAGACAGCAT
GCAAAAGAGATGCTAATTTTAGCGGATTCGATCAAACAAAAAATATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.401

99.826

0.553