Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG291_RS18545 Genome accession   NZ_CP084990
Coordinates   3650743..3652425 (-) Length   560 a.a.
NCBI ID   WP_404355465.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3645743..3657425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS18525 (LG291_18370) - 3647266..3647502 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  LG291_RS18530 (LG291_18375) - 3647520..3647660 (+) 141 WP_394579847.1 YycC family protein -
  LG291_RS18535 (LG291_18380) spo0A 3648175..3648963 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  LG291_RS18540 (LG291_18385) spoIVB 3649271..3650560 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  LG291_RS18545 (LG291_18390) recN 3650743..3652425 (-) 1683 WP_404355465.1 DNA repair protein RecN Machinery gene
  LG291_RS18550 (LG291_18395) ahrC 3652512..3652961 (-) 450 WP_009332889.1 transcriptional regulator AhrC/ArgR -
  LG291_RS18555 (LG291_18400) - 3653133..3653978 (-) 846 WP_404355467.1 TlyA family RNA methyltransferase -
  LG291_RS18560 (LG291_18405) dxs 3653982..3655877 (-) 1896 WP_404355469.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG291_RS18565 (LG291_18410) - 3656412..3657305 (-) 894 WP_394579856.1 polyprenyl synthetase family protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63187.26 Da        Isoelectric Point: 5.2235

>NTDB_id=614219 LG291_RS18545 WP_404355465.1 3650743..3652425(-) (recN) [Cytobacillus firmus strain WLG-456]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKTGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLKEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVAALKKDLMVEGEELSNLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPIKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTAVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=614219 LG291_RS18545 WP_404355465.1 3650743..3652425(-) (recN) [Cytobacillus firmus strain WLG-456]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAGGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAGTTTGGGATTGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATAGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACTTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCGCACCGGCTTGATTTAATTCAATTTCAGCTTGATGAAATCCAATCAGCACAGCTGAAATTGAAGGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAACTTTGAACGTATTTTTGATTCGGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTGGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAACTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATCTGCTTGAAGATGCGGCCAGTTCACTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGACTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAGGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTGCTGCCTTGAAAAAAGACCTTATGGTTGAAGGGGAAGAATTGAGCAACCTGCGGAGAAAGTCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGGTTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGATCAA
GCCTCTGTCTAAAATTGCATCGGGTGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAGGTGCTTTGCATCTCTCATCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGGCGGACCAAAACTGCAGTGAAGCCACTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGAGTGGAAATTACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.498

100

0.63