Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG291_RS07395 Genome accession   NZ_CP084990
Coordinates   1421581..1423398 (+) Length   605 a.a.
NCBI ID   WP_197207648.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416581..1428398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS07370 (LG291_07320) - 1416927..1417115 (-) 189 WP_076256698.1 hypothetical protein -
  LG291_RS07375 (LG291_07325) - 1417360..1417935 (+) 576 WP_404358379.1 GNAT family N-acetyltransferase -
  LG291_RS07380 (LG291_07330) spxA 1418410..1418805 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  LG291_RS07385 (LG291_07335) mecA 1419158..1419823 (+) 666 WP_048010951.1 adaptor protein MecA -
  LG291_RS07390 (LG291_07340) - 1420268..1421458 (+) 1191 WP_404358381.1 competence protein CoiA -
  LG291_RS07395 (LG291_07345) pepF 1421581..1423398 (+) 1818 WP_197207648.1 oligoendopeptidase F Regulator
  LG291_RS07400 (LG291_07350) - 1423915..1424790 (-) 876 WP_394583307.1 ClpXP adapter SpxH family protein -
  LG291_RS07405 (LG291_07355) - 1424787..1425191 (-) 405 WP_048010947.1 globin -
  LG291_RS07410 (LG291_07360) - 1425439..1426080 (-) 642 WP_404358384.1 lytic transglycosylase domain-containing protein -
  LG291_RS07415 (LG291_07365) - 1426113..1426703 (-) 591 WP_394583311.1 CYTH domain-containing protein -
  LG291_RS07420 (LG291_07370) - 1426902..1427279 (+) 378 WP_048010944.1 hypothetical protein -
  LG291_RS07425 (LG291_07375) - 1427423..1428061 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69927.36 Da        Isoelectric Point: 4.9463

>NTDB_id=614208 LG291_RS07395 WP_197207648.1 1421581..1423398(+) (pepF) [Cytobacillus firmus strain WLG-456]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDRIKNLYSEAASALAYIVPELLAEDEEKIAGFLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=614208 LG291_RS07395 WP_197207648.1 1421581..1423398(+) (pepF) [Cytobacillus firmus strain WLG-456]
ATGGCTAATGAAACAACTGTAAAAAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCCGATGATGAGTGGAACAAGGAATACAGTGAAGTACAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGGGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTTCAGGATCATTTACTTTCACGACTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACTACAAATTCATTTTATCAGGGAATGGATGACAGAATTAAAAATTTGTA
TTCTGAAGCTGCTAGTGCACTTGCCTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCTGGCTTTTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCATCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGCATGCTGAATAATGCAGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ATGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGCAATACATTTGCAAGCACT
CTAAGCGGAAACGTAAAAAAAGATAATTTCAACGCAAAGATCCGAAATTATGACTCTGCACGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCACCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTATGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAAGCAAAAGACCTGATTTTAAAAGGATTAAAGCCACTTGGTGAAGACTATTTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTTGATGTTCATGAGAACAAAGGCAAAAGGAGCGGGGCTTATTCTTCGGGAACCTATG
GCACTAACCCTTATATACTAATGAACTGGCAGGACAATGTGAACAACTTATTTACTCTGGCTCATGAATTTGGCCATTCG
GTTCACAGCTACTACACAAGAAAATATCAGCCATACCCTTATGGAAACTACTCGATTTTTGTTGCAGAGGTTGCCTCTAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCACAA
AACAATGAAGCTTTGACTGCTGATTCATTGACCAAAGAATATTATGAACTTAATAAGAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTTGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCCGATTACCCAATTGAAGTGTTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAATGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486