Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LG291_RS05790 Genome accession   NZ_CP084990
Coordinates   1109438..1110241 (+) Length   267 a.a.
NCBI ID   WP_404358077.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1110356..1111714 1109438..1110241 flank 115


Gene organization within MGE regions


Location: 1109438..1111714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS05790 (LG291_05745) recX 1109438..1110241 (+) 804 WP_404358077.1 recombination regulator RecX Regulator
  LG291_RS05795 (LG291_05750) - 1110356..1111714 (+) 1359 WP_404354645.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31551.00 Da        Isoelectric Point: 5.3767

>NTDB_id=614196 LG291_RS05790 WP_404358077.1 1109438..1110241(+) (recX) [Cytobacillus firmus strain WLG-456]
MPTITKITVQKKNTDRYNIYMDYGKGEEYAFSVDEDVLIKHQLKKGMELDEFSLNEIGYQDDIRKAYNRAIHYLSRRMRS
ETEVRKHLAEKEVEEPVIQEVIHKLYDYHFLNDEEFAAAFVRTQMNTSDKGKGLIRTELKEKGISPQLIEMALGEYPRDA
ELAAAIRLCEKYSKKYARDSSKIIKQKLEQMLMRKGFNFDIIQEAVSETEIEKEEDEELAALRFQAEKAKKKYANLPEFE
YMQKMKQALFRKGFSFDLIEQFLSEEE

Nucleotide


Download         Length: 804 bp        

>NTDB_id=614196 LG291_RS05790 WP_404358077.1 1109438..1110241(+) (recX) [Cytobacillus firmus strain WLG-456]
ATGCCGACTATTACGAAAATCACAGTTCAGAAAAAAAACACAGACCGCTACAATATATATATGGATTATGGGAAAGGTGA
AGAATATGCATTTAGTGTGGATGAAGATGTTTTAATTAAGCATCAGCTAAAAAAGGGAATGGAGCTTGATGAATTCTCTT
TAAATGAAATTGGCTATCAGGATGATATCCGGAAAGCCTATAACAGGGCTATTCATTATTTATCCAGAAGAATGCGCTCA
GAAACCGAAGTCCGCAAACATTTAGCTGAAAAAGAAGTGGAAGAACCGGTTATTCAGGAAGTTATCCACAAATTGTATGA
TTACCATTTTTTAAATGATGAAGAATTTGCAGCAGCTTTTGTGCGTACACAAATGAACACATCAGATAAAGGGAAAGGCC
TGATCCGCACAGAACTAAAGGAAAAAGGGATTTCCCCTCAATTAATCGAAATGGCATTGGGGGAATATCCAAGGGATGCT
GAATTAGCTGCCGCTATAAGGCTGTGTGAAAAGTATTCAAAGAAATATGCCCGTGATTCATCCAAAATCATTAAACAAAA
GCTGGAACAGATGTTAATGCGCAAAGGCTTTAATTTCGACATTATTCAAGAAGCCGTATCTGAAACGGAGATTGAGAAAG
AAGAGGATGAAGAACTGGCTGCCCTGAGGTTCCAGGCGGAAAAAGCGAAGAAGAAATATGCAAACCTTCCTGAGTTCGAA
TATATGCAAAAAATGAAACAAGCCTTGTTCAGAAAAGGTTTTTCTTTTGACTTAATAGAGCAATTTTTAAGTGAAGAAGA
ATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(88-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

50.562

100

0.506