Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG291_RS01080 Genome accession   NZ_CP084990
Coordinates   192162..193115 (+) Length   317 a.a.
NCBI ID   WP_095245830.1    Uniprot ID   -
Organism   Cytobacillus firmus strain WLG-456     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 187162..198115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG291_RS01055 - 188020..188145 (+) 126 WP_258752018.1 hypothetical protein -
  LG291_RS01060 (LG291_01055) glmS 188242..190044 (+) 1803 WP_197205666.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LG291_RS01065 (LG291_01060) - 190244..190591 (+) 348 WP_404356991.1 short-chain dehydrogenase -
  LG291_RS01070 (LG291_01065) - 190672..191103 (+) 432 WP_404359391.1 DUF4275 family protein -
  LG291_RS01075 (LG291_01070) - 191248..191637 (+) 390 WP_095245829.1 ribbon-helix-helix protein, CopG family -
  LG291_RS01080 (LG291_01075) ceuB 192162..193115 (+) 954 WP_095245830.1 ABC transporter permease Machinery gene
  LG291_RS01085 (LG291_01080) - 193105..194058 (+) 954 WP_061793977.1 iron chelate uptake ABC transporter family permease subunit -
  LG291_RS01090 (LG291_01085) - 194055..194822 (+) 768 WP_163144674.1 ABC transporter ATP-binding protein -
  LG291_RS01095 (LG291_01090) - 195018..196043 (+) 1026 WP_394581688.1 siderophore ABC transporter substrate-binding protein -
  LG291_RS01100 (LG291_01095) - 196136..196774 (+) 639 WP_404356994.1 O-methyltransferase -
  LG291_RS01105 (LG291_01100) - 196828..197664 (-) 837 WP_248346546.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34689.75 Da        Isoelectric Point: 9.3878

>NTDB_id=614191 LG291_RS01080 WP_095245830.1 192162..193115(+) (ceuB) [Cytobacillus firmus strain WLG-456]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=614191 LG291_RS01080 WP_095245830.1 192162..193115(+) (ceuB) [Cytobacillus firmus strain WLG-456]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCGTTTATCTCGCTGTTTATCGGAGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACACATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATAT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATCATGCAGTCTCTAAGCCGCAATAAGTTTGTATCACCAACAACTGCC
GGAACATTGGATGCAGCAAAACTGGGAATTTTAATTTCCATGCTGTTTTTTACGAATGTCACGTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCAATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTAATGGGAAGCTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTCAGTATTCC
CGCTATTATTCTGGCGTATCTATATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTGCTGAATATTGGCCTTGTCCTTGTTGCGGTTATCTCAACAACAGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACGGTGGCAGTAATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527